Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0349
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    31   0.16 
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    29   0.66 
SPAC8C9.10c |||ribosome biogenesis protein Rrp14-N|Schizosacchar...    28   1.2  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    27   1.5  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   1.5  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    27   2.7  
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    26   4.7  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   4.7  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   4.7  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   6.2  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   6.2  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   8.1  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    25   8.1  

>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 11  SKEKKDKEAVKSQAEGLNKE-YDRLAEEHSKLQKKLTVS 124
           SK+KK K+  KSQ + LN+E Y RL    + LQK L +S
Sbjct: 58  SKKKKKKKLKKSQ-QPLNEENYPRLQTTENNLQKPLKIS 95


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 2   KELSKEKK---DKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGE 130
           +EL+K K+   D E  K+Q E +N+EY  L    + LQK+    GE
Sbjct: 549 EELAKAKQISLDIETNKAQTEQVNREYSILEATLNALQKQNKQKGE 594


>SPAC8C9.10c |||ribosome biogenesis protein
           Rrp14-N|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 2   KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGD 136
           K   +EKK++  +K   +GL  + D  +++ SK ++  T+S + D
Sbjct: 40  KSTLEEKKERRKMKFSLDGLVNDADDDSQKSSKWEQSSTMSDDTD 84


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 2   KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKK 112
           K   KEKKDK+  K +     +  D  +EE  K +KK
Sbjct: 457 KPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKK 493


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/57 (24%), Positives = 32/57 (56%)
 Frame = +2

Query: 2    KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE*ILDITE 172
            K+LS  KKD++ + S+ + L K+Y  +  ++    + L+   +  ++K+  I ++ E
Sbjct: 951  KKLSSIKKDEQTISSKYKELEKDYLNIMADYQHSSQHLSNLEKAINEKNLNIRELNE 1007


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 2   KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKK 145
           +E SK+KK+K   K + + L K+  RL  + S  QK+     + +SKK
Sbjct: 141 REKSKKKKEK---KEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESKK 185


>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +2

Query: 11  SKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQK 109
           +K  ++ E ++++ E  +KEY+ LAE+++ + K
Sbjct: 148 AKAVEELETLRTKLETRDKEYETLAEKYAAVTK 180


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +2

Query: 29  KEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE*ILDITECMSLILMK 196
           K    SQ+  ++ E + +A+      +    S + D K+DE   D   C++L+ +K
Sbjct: 274 KATYVSQSSSISSEDEEIAKNADVPAEVDNNSTKADDKRDEIEFDTKGCLALLTIK 329


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 2    KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGE 130
            KE+ + + DKE +  Q + L+ E   L  EHS  Q  L  + E
Sbjct: 1528 KEIHELRSDKEGLVQQVQNLSAELAAL-REHSPTQGSLENADE 1569


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 2   KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKK 145
           KE  ++KK +  +  + E   +E +RLAE+ +  QK L    + +++K
Sbjct: 594 KEKKRDKKKQLKLAKEEERQRREAERLAEQAA--QKALEAKRQEEARK 639


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 20  KKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKL 115
           K+ +E ++   EG   E     EEHSKL K+L
Sbjct: 683 KQMEEEMQVLREGHESEIKDFIEEHSKLTKQL 714


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 2   KELSKEKKDKEAVKSQAEGLNKEYDRL-AEEHS 97
           KE  +E + KEA++   E   ++YD+L  E HS
Sbjct: 529 KERQEELRRKEAMQKIEEQSKRDYDKLHGEGHS 561


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 14  KEKKDKEAVKSQAEGLNKEY-DRLAEEHSKLQKKLTVSGEGDSKK 145
           K+KK  +  ++  E   KE  ++  ++H K ++K   S +G+S K
Sbjct: 454 KKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPK 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,743,698
Number of Sequences: 5004
Number of extensions: 29581
Number of successful extensions: 112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)