Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0349
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0256 + 3402982-3402984,3403077-3403158,3403307-3403449,340...    32   0.29 
04_01_0227 - 2877303-2877659,2877755-2877897,2878102-2878183,287...    32   0.29 
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960...    31   0.51 
06_02_0367 - 15222703-15223088,15224761-15224826,15226748-15227048     30   1.2  
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199...    29   2.1  
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324...    29   3.6  
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987...    28   4.8  
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944...    27   8.3  
07_01_0463 + 3502708-3503535                                           27   8.3  
01_05_0487 + 22641133-22642182,22642276-22642863,22642961-226430...    27   8.3  

>04_01_0256 +
           3402982-3402984,3403077-3403158,3403307-3403449,
           3403557-3403832,3404136-3404315
          Length = 227

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +2

Query: 2   KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKL 115
           +E  + K+DKE +  + +   KE  RL EE+ KLQ+K+
Sbjct: 123 EEQKRLKRDKENLNLKVDTKRKENRRLEEENKKLQRKI 160


>04_01_0227 -
           2877303-2877659,2877755-2877897,2878102-2878183,
           2878289-2878291
          Length = 194

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 2   KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKL 115
           +EL   K++KE + ++ E   +E  RL EE+ KLQ+K+
Sbjct: 144 EELKITKREKEYLNTKLETKREENKRLDEENKKLQRKI 181


>03_05_0951 +
           29093962-29094373,29095291-29095388,29095689-29096087,
           29096999-29097724,29097802-29097968,29098046-29098311,
           29098396-29098581,29099072-29099346,29099435-29099683
          Length = 925

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 14  KEK-KDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE 151
           K+K K ++++ S+ EG+NK+ + +     K    ++  G+   KKDE
Sbjct: 611 KDKDKTQDSIDSEVEGINKKGETVLSVEGKKSSPISPKGQDTDKKDE 657


>06_02_0367 - 15222703-15223088,15224761-15224826,15226748-15227048
          Length = 250

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +2

Query: 2   KELSKEKKDKEA----VKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKD 148
           KE + E KD EA     + Q+EGL  EY+ L E++  L  +L  +    S+ D
Sbjct: 193 KEKANEAKDAEAKALAAQKQSEGLMIEYNHLVEDNKHLHDQLESADLTVSRSD 245


>11_06_0315 +
           22318155-22318210,22319743-22319769,22319868-22319990,
           22320867-22321110,22321487-22321981
          Length = 314

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 2   KELSKEKKDKEAVKSQAEGL---NKEYDRLAEEHSKLQKKLTVSGEGDSKKD 148
           K L   K+DK+AVK   +     +KE  +  ++  +L+K L  S E  S+KD
Sbjct: 202 KPLKDSKEDKKAVKEDKKAAAKDSKEQKKALKDSKELKKALKDSKEQGSQKD 253


>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
            3242494-3242836,3244138-3248540,3248928-3249107,
            3249108-3250892,3251055-3252173
          Length = 2727

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/64 (31%), Positives = 33/64 (51%)
 Frame = +2

Query: 2    KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE*ILDITECMS 181
            KELS  ++  +  +S+   L K+YD L +E+  L +K       ++  DE    I EC+ 
Sbjct: 1987 KELSGLRQSYQTSQSEICNLTKKYDSLLQEYKVLVEKY------NALDDENAAVIAECIK 2040

Query: 182  LILM 193
            L L+
Sbjct: 2041 LDLL 2044


>03_02_0998 -
           13097675-13098079,13098307-13098441,13098522-13098722,
           13099060-13099359,13099449-13099649,13099932-13100096,
           13100170-13100349,13100896-13100937,13101040-13101117
          Length = 568

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 2   KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE 151
           K+  K K+ +E   + AEG  KE  +  +  S+  K + +  E   KKD+
Sbjct: 509 KKKKKSKESEEPPVATAEGEKKEKKKKKKSDSQDAKDVAMETEASGKKDK 558


>09_06_0010 -
           20193577-20193921,20194014-20194160,20194239-20194495,
           20194619-20194826
          Length = 318

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +2

Query: 47  QAEGLNKEYDRLAEEHSKLQKKLT----VSGEGDSKKDE*ILDITECMSLILMKLNVVYA 214
           +AE   K   R++ +  KL  K+T    + G+G    D  ++ +TE +   L+KL+ + A
Sbjct: 134 KAERAAKSISRISLDVDKLATKVTALEAIVGKGGRVVDADVVTLTEALMNELVKLDAIAA 193

Query: 215 ASSITV 232
              + V
Sbjct: 194 EGEVKV 199


>07_01_0463 + 3502708-3503535
          Length = 275

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 2   KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSG-EGDSKKDE 151
           KE+ ++KKDK   K + +   K+ D   EE  K +KK    G E + KK++
Sbjct: 107 KEMKEKKKDKSDKKEEGK---KKKDGDEEEGKKKEKKKDKDGDEKEGKKEK 154


>01_05_0487 +
           22641133-22642182,22642276-22642863,22642961-22643068,
           22643582-22643692,22643784-22643849,22644858-22644917,
           22644990-22645119,22645159-22645547,22645783-22645902,
           22645957-22646022,22646190-22646255
          Length = 917

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 29  KEAVKSQAEGLNKEYDRLAEEHSKLQKKLT 118
           K+A+K QAEG+  E+D    + + L+ K+T
Sbjct: 562 KKALKQQAEGVKMEFDARLTDCTVLEVKVT 591


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,467,086
Number of Sequences: 37544
Number of extensions: 138376
Number of successful extensions: 405
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)