Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0349
(586 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32504| Best HMM Match : TolA (HMM E-Value=0.52) 36 0.032
SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47) 33 0.17
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 32 0.30
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 32 0.40
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037) 30 1.6
SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4) 29 2.1
SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0) 29 3.7
SB_31222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_5006| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 28 4.9
SB_28378| Best HMM Match : DUF1542 (HMM E-Value=7.7) 28 4.9
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08) 28 4.9
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06) 28 6.4
SB_28574| Best HMM Match : KE2 (HMM E-Value=1.2) 28 6.4
SB_15757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0) 28 6.4
SB_51234| Best HMM Match : E-MAP-115 (HMM E-Value=6.7) 27 8.5
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_32504| Best HMM Match : TolA (HMM E-Value=0.52)
Length = 422
Score = 35.5 bits (78), Expect = 0.032
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE 151
KEL +EKK+KE + + E +KE R E+ + +K+ T E +S++ E
Sbjct: 131 KELKEEKKEKEKERMKKEEKHKEKTRKEEKEREKEKEKTKKEEKESREKE 180
>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
Length = 626
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +2
Query: 5 ELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE*ILDI 166
E+ K + D S A+ + E + +E LQK+L +SGE + +KD+ +LD+
Sbjct: 284 EIEKLRGDISKQFSDADEIQSELGKTKQEMLALQKELFLSGEREKRKDQ-LLDL 336
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = +2
Query: 11 SKEKKDKEAVKSQAEGLNKEYDRL----AEEHSKLQKKLTVSGEGDSKKDE 151
+K+KK++E ++ QAE KE +RL EE +L+KK E K++E
Sbjct: 346 AKQKKEQERLEKQAEKEKKEKERLEKKQREEKDRLEKKEKKEEEKRKKEEE 396
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE 151
K+ KEKK+KE ++ + +E DRL ++ K ++K E ++K +E
Sbjct: 357 KQAEKEKKEKERLEKKQ---REEKDRLEKKEKKEEEKRKKEEEINAKIEE 403
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +2
Query: 14 KEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE*ILDITECMSL 184
K KD E + LN++Y++L EH + + L + K+E I+D+ +++
Sbjct: 1971 KALKDNEDAERNYLDLNRKYNKLVMEHGNISRDLESLKHDNDLKNERIIDLESSLAV 2027
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE*ILDITECMS 181
+EL E K + +K E D L EE KLQKKL E ++ I D E +
Sbjct: 2129 EELQSEMKQQAQLKGVLEQTKLRNDNLKEEILKLQKKL---AEQQKYHEDQIRDFPELKA 2185
Query: 182 LI 187
+I
Sbjct: 2186 VI 2187
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 5 ELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTV 121
E + KKD A++ + L + D L E++KLQ +LT+
Sbjct: 1175 ERERLKKDNSALQKEVSSLKIQLDALKHENNKLQNELTL 1213
>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
Length = 703
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 8 LSKEKKDKEAVKSQAEGLNKEYDRLAEE-HSKLQKKLTVSGEGDSKKDE 151
L +EK+D++ K + L +E +RLAEE K + K E + ++ E
Sbjct: 153 LEEEKEDEDRQKEELLKLRREEERLAEEARKKAEAKARFEQEAERRRRE 201
>SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 600
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE*ILDITECMS 181
K+ K+DK ++ KE +L+EE+ +LQ K+TV DSK + + +
Sbjct: 204 KQEDTAKQDKRRLQEVILTKEKELFKLSEEYKELQAKITVL--SDSKTESMAMASSSQEQ 261
Query: 182 LILMKLNVVYAASSITVL 235
+ MK + A IT L
Sbjct: 262 IKAMKDLLAKARDEITSL 279
>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
Length = 311
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKK 145
KE + K+ E V + E +NK+ +RL + + K+ T G+G +++
Sbjct: 96 KETERVNKETERVNKERERVNKKKERLNKGSIEQGKRATEQGKGATEQ 143
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKK 112
K+ + K+KE + + E LNKE RL +E ++ K+
Sbjct: 234 KKKERLNKEKEQLNKEKEQLNKERKRLNKERKRVNKE 270
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKK 112
KE + K+KE + + + LNKE R+ +E +L K+
Sbjct: 241 KEKEQLNKEKEQLNKERKRLNKERKRVNKERERLNKE 277
>SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 638
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKK 112
K+ + K+KE + + E LNKE RL +E ++ K+
Sbjct: 493 KKKERLNKEKEQLNKEKEQLNKERKRLNKERKRVNKE 529
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKK 112
KE+ + K +E + + + LNKE RL +E +L K+
Sbjct: 584 KEMERLDKTRERLNKERKRLNKERKRLNKERKRLNKE 620
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKK 112
KE + K+KE + + + LNKE R+ +E +L K+
Sbjct: 500 KEKEQLNKEKEQLNKERKRLNKERKRVNKERERLNKE 536
>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1589
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 316 FGISLTTNITDNEMKNKLTNFHVRSSLKRKSKFQHCYIA*ILYLEILKISKVN-RLSL 486
FGI+ +T +T ++ + NFH ++ + + + ++A + L+ L++ + N R+SL
Sbjct: 1319 FGINKSTVLTYHKDTSVFVNFHALAASDQVFGYVYAFVAFFVSLKFLRLFRFNKRMSL 1376
>SB_31222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 11 SKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQK 109
+K+KK E ++ + L KE L HSKLQK
Sbjct: 195 AKKKKYMEDLEKTVQDLKKENQELQTGHSKLQK 227
>SB_5006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 657
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNK---EYDRLAEEHSKLQKKLT 118
KEL + ++DK+ + E +K Y +L EEH +L + LT
Sbjct: 54 KELEEREEDKKGASASEEKFSKLKTMYSKLREEHIQLLRGLT 95
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +2
Query: 8 LSKEKKDKEAVKSQAEGLNK----EYDRLAEEHSKLQKKLTVSGE 130
L +++++E ++ Q L K EYDR A + SKL ++ T S E
Sbjct: 2431 LENQRREEELLEEQHSLLQKRLLHEYDRYARDCSKLDRERTASVE 2475
>SB_28378| Best HMM Match : DUF1542 (HMM E-Value=7.7)
Length = 63
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKL 115
++++ K KE++++Q E +E + E H LQK+L
Sbjct: 6 RQVTNIGKQKESIETQLETAKEELKKSKETHCDLQKEL 43
>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
Length = 551
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 5 ELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKL 115
E+ K K + E ++ + LN++ L+ E S+LQKKL
Sbjct: 488 EIEKIKAELEELQQKTVTLNRKRKSLSSECSQLQKKL 524
>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
Length = 1292
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 59 LNKEYDRLAEEHSKLQKKLTVSGE 130
LN+E + EEH +LQ ++ + GE
Sbjct: 755 LNQELQNMKEEHERLQNEMKLQGE 778
>SB_28574| Best HMM Match : KE2 (HMM E-Value=1.2)
Length = 210
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +2
Query: 5 ELSKEKKD----KEAVKSQAEGLNKEYDRLAEEHSKLQKK 112
EL+ KK+ K+Q E L EY+RL ++HS+L +
Sbjct: 84 ELASNKKEFLFNVTRAKAQHEELELEYNRLQQQHSRLSSE 123
>SB_15757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 23 KDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE 151
++K A + NKE ++ E K + K G G+ KKDE
Sbjct: 31 EEKPAEEESKPEENKEEEKKEESEKKEEDKTDGGGGGEEKKDE 73
>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 805
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKK 112
K L EKK E VK Q +E L +EH LQ +
Sbjct: 413 KNLELEKKKYEKVKEQFTTTEQELKDLKKEHDALQSE 449
>SB_51234| Best HMM Match : E-MAP-115 (HMM E-Value=6.7)
Length = 122
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 14 KEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGE 130
K K++ +A K Q + ++ + AEE + +KK T GE
Sbjct: 80 KLKQENDAKKQQIKDAKEKQKQKAEERKEKEKKRTQKGE 118
>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1967
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKL 115
+ L + +K+K A++S+ E L ++ + L +HS +K+L
Sbjct: 1312 RTLEEVQKEKNALESKIEELTQKSETLMGKHSDKEKEL 1349
>SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 14 KEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE 151
K+K+++E +K + E E RL E+ K+QK+ E +K+E
Sbjct: 427 KKKEEQEKIKREEE---LEEQRLEEQRIKMQKEFEEEQEKARRKEE 469
>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKD 148
K K+ KDK +S + KE + E K K VSGE +S+ D
Sbjct: 976 KVKDKKGKDKTTKRSSKDKETKEKKKKNEIEQKTLPKKHVSGEEESEDD 1024
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,781,906
Number of Sequences: 59808
Number of extensions: 182046
Number of successful extensions: 615
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -