Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0349
(586 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF304120-1|AAG50233.1| 213|Caenorhabditis elegans 4D656 protein. 34 0.085
AC024817-36|AAF59580.1| 213|Caenorhabditis elegans Hypothetical... 34 0.085
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom... 31 0.80
AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans hom... 31 0.80
AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans hom... 31 0.80
Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical p... 30 1.4
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 29 2.4
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 29 2.4
AC024838-6|AAF60823.1| 214|Caenorhabditis elegans Hypothetical ... 29 2.4
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 29 3.2
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 29 3.2
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 29 3.2
U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical ... 28 4.2
AC006642-4|AAF39830.1| 257|Caenorhabditis elegans Hypothetical ... 28 4.2
AL033510-4|CAA22070.2| 343|Caenorhabditis elegans Hypothetical ... 28 5.6
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 27 7.4
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 27 9.8
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 27 9.8
Z71262-4|CAA95814.1| 775|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z48009-3|CAA88078.1| 331|Caenorhabditis elegans Hypothetical pr... 27 9.8
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 27 9.8
AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical ... 27 9.8
AC091124-1|AAK27878.1| 255|Caenorhabditis elegans Hypothetical ... 27 9.8
>AF304120-1|AAG50233.1| 213|Caenorhabditis elegans 4D656 protein.
Length = 213
Score = 33.9 bits (74), Expect = 0.085
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 5 ELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKD 148
EL D++ +K Q+EGL +E+DR+++ + + +GD KKD
Sbjct: 171 ELKSANTDRDTLKKQSEGLQREFDRVSD-----LLRDSAESKGDKKKD 213
>AC024817-36|AAF59580.1| 213|Caenorhabditis elegans Hypothetical
protein Y54G2A.18 protein.
Length = 213
Score = 33.9 bits (74), Expect = 0.085
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 5 ELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKD 148
EL D++ +K Q+EGL +E+DR+++ + + +GD KKD
Sbjct: 171 ELKSANTDRDTLKKQSEGLQREFDRVSD-----LLRDSAESKGDKKKD 213
>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform a protein.
Length = 1273
Score = 30.7 bits (66), Expect = 0.80
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 26 DKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKD 148
+KE +K Q E L K D L ++ +Q+KL ++ + +KD
Sbjct: 189 EKEKMKEQNEILEKNMDSLESKNKDIQRKLEIAKQTVEQKD 229
>AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform b protein.
Length = 619
Score = 30.7 bits (66), Expect = 0.80
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 26 DKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKD 148
+KE +K Q E L K D L ++ +Q+KL ++ + +KD
Sbjct: 189 EKEKMKEQNEILEKNMDSLESKNKDIQRKLEIAKQTVEQKD 229
>AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform c protein.
Length = 621
Score = 30.7 bits (66), Expect = 0.80
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 26 DKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKD 148
+KE +K Q E L K D L ++ +Q+KL ++ + +KD
Sbjct: 189 EKEKMKEQNEILEKNMDSLESKNKDIQRKLEIAKQTVEQKD 229
>Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical
protein T04A8.13 protein.
Length = 791
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE 151
KE SKE K ++ EG N+E + +E K +K+ E D +K++
Sbjct: 117 KEESKEDKKEKTKTEDNEGKNEEKKKEKKEEKKDEKEKKEKTEDDKEKEK 166
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKE-----YDRLAEEHSKLQKKLTVSGE 130
K+ KE K+ EA A G KE YDRL E+ KL+ T E
Sbjct: 629 KDKKKEVKEAEAALKSARGAEKEKAQKKYDRLKEQLKKLKISRTDKDE 676
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKE-----YDRLAEEHSKLQKKLTVSGE 130
K+ KE K+ EA A G KE YDRL E+ KL+ T E
Sbjct: 701 KDKKKEVKEAEAALKSARGAEKEKAQKKYDRLKEQLKKLKISRTDKDE 748
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKE-----YDRLAEEHSKLQKKLTVSGE 130
K+ KE K+ EA A G KE YDRL E+ KL+ T E
Sbjct: 701 KDKKKEVKEAEAALKSARGAEKEKAQKKYDRLKEQLKKLKISRTDKDE 748
>AC024838-6|AAF60823.1| 214|Caenorhabditis elegans Hypothetical
protein Y59E9AL.6 protein.
Length = 214
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 17 EKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE 151
EKKD + EG K+ ++ E K +KK +GD KKDE
Sbjct: 70 EKKDGDKKSEMKEGEEKKNEK-KEGDEKDEKKDEEKKDGDDKKDE 113
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTV 121
K +K+++ ++ Q E K +DRL E KLQ+K+ V
Sbjct: 1845 KGYTKQERRARELQFQVEEDKKAFDRLQENVEKLQQKIRV 1884
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
R06C7.10 protein.
Length = 1938
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTV 121
K +K+++ ++ Q E K +DRL E KLQ+K+ V
Sbjct: 1845 KGYTKQERRARELQFQVEEDKKAFDRLQENVEKLQQKIRV 1884
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQK--KLTVSGEGDSKKDE 151
KEL +K+K ++ Q + L K ++ E+ KLQK +L ++ S +DE
Sbjct: 303 KELEASEKEKSELREQMDRLQKVHNAGQEDIQKLQKTWELEMAKIAKSTEDE 354
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQK--KLTVSGEGDSKKDE 151
KEL +K+K ++ Q + L K ++ E+ KLQK +L ++ S +DE
Sbjct: 303 KELEASEKEKSELREQMDRLQKVHNAGQEDIQKLQKTWELEMAKIAKSTEDE 354
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTV 121
K +K+++ ++ Q E K +DRL E KLQ+K+ V
Sbjct: 1845 KGYTKQERRARELQFQVEEDKKAFDRLQENVEKLQQKIRV 1884
>U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical
protein C50F2.2 protein.
Length = 1029
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 14 KEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVS 124
K++ DK+ + ++ LN++ +E SK+ KK +S
Sbjct: 211 KDQSDKDIISNKKRKLNRQSKEEIDERSKIAKKAPIS 247
>AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical
protein T06D10.2 protein.
Length = 479
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE 151
K L KEKK+KE + + E K+ ++ E K +K E KKDE
Sbjct: 128 KRLDKEKKEKERLDKKLEEDKKKEEKRKEAEEKKKK----DEEEKMKKDE 173
>AC006642-4|AAF39830.1| 257|Caenorhabditis elegans Hypothetical
protein F49H12.5 protein.
Length = 257
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 5 ELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE 151
E +EKKDK+ + + E K+ D+ +E K +KK + D KKD+
Sbjct: 187 EKKEEKKDKKKDEKKEEKKEKKEDKKKDEKKKDKKKEDKKDKKD-KKDK 234
>AL033510-4|CAA22070.2| 343|Caenorhabditis elegans Hypothetical
protein Y40H7A.6 protein.
Length = 343
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 218 SSITVLIYFKSILII-VCHLLFKCFQKVALHI 310
SS ++ KSIL+I V HL+F C VA+ I
Sbjct: 241 SSFENVLTTKSILVIAVTHLIFSCLSSVAVTI 272
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 26 DKEAVKSQAEGLNKEYDRLAEEHSKL---QKKLTVSGEGDSKKDE 151
D AEGL DRL E +KL KK + +GDS +E
Sbjct: 99 DVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEE 143
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 17 EKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSG 127
E KD+E K EG +E + +EE +KLQ KL G
Sbjct: 830 EDKDEEYRKIVQEG--EELQKCSEERNKLQSKLNELG 864
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 17 EKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSG 127
E KD+E K EG +E + +EE +KLQ KL G
Sbjct: 816 EDKDEEYRKIVQEG--EELQKCSEERNKLQSKLNELG 850
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 17 EKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSG 127
E KD+E K EG +E + +EE +KLQ KL G
Sbjct: 816 EDKDEEYRKIVQEG--EELQKCSEERNKLQSKLNELG 850
>Z71262-4|CAA95814.1| 775|Caenorhabditis elegans Hypothetical
protein F22D6.5 protein.
Length = 775
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE 151
K+ KEKK K+ K + E +K + E+ K E D+KKDE
Sbjct: 46 KKHKKEKKHKKDKKHKKEKKHKREKEVEMENDGPPAKKRTLEEVDTKKDE 95
>Z48009-3|CAA88078.1| 331|Caenorhabditis elegans Hypothetical
protein AH6.4 protein.
Length = 331
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 203 VVYAASSITVLIYFKSILIIVC---HLLFKCFQKVALHIWTLE 322
VV A +T+L+Y +LI+ C ++L F K+ ++T++
Sbjct: 240 VVCMAQFVTMLVYSSGVLILRCNMSNILLTTFYKLITWVYTVQ 282
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 2 KELSKEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKD 148
K++ K+K+DKE+ + + EYD +E+ S SG G+S+ D
Sbjct: 475 KDIKKKKEDKESSEGTGSEPDDEYDSGSEQDS--------SGTGESEPD 515
>AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical
protein Y6B3B.4 protein.
Length = 561
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +2
Query: 8 LSKEKKDKEAVKSQAE---GLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE 151
L+ E K EA++ AE + E D+L EH K QK L + K+ E
Sbjct: 98 LNLEIKQAEAMEIDAELERQVEMEADKLEREHRKNQKNLKKEEKKQEKQQE 148
>AC091124-1|AAK27878.1| 255|Caenorhabditis elegans Hypothetical
protein Y47A7.2 protein.
Length = 255
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 14 KEKKDKEAVKSQAEGLNKEYDRLAEEHSKLQK 109
+ KK+K ++K+ A NKE RL + ++L K
Sbjct: 127 RSKKEKNSLKAAARTCNKEARRLKSQCARLAK 158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,395,462
Number of Sequences: 27780
Number of extensions: 159027
Number of successful extensions: 836
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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