Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0346
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 0.83
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 29 0.83
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 28 1.1
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 28 1.5
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 28 1.5
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 27 1.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 1.9
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.4
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 27 3.4
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 27 3.4
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 27 3.4
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 27 3.4
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 27 3.4
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 26 4.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.9
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 26 5.9
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 26 5.9
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 25 7.8
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 25 7.8
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 25 7.8
SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces... 25 7.8
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.7 bits (61), Expect = 0.83
Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Frame = +2
Query: 149 ASTAASDSEPTSLPSLPQEDKVAEETGDRIGNYSNEVNHVPIGEKNGFRRRSTYPPLSAS 328
+ +++ D++ +S S + + +E++ + +E G + S+ S+
Sbjct: 119 SESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSE 178
Query: 329 ILSNFEENFESLIDNLT-DADSLTSSTETEVFKSVGDSDSACSDESGYSE 475
+ + +S ++ + D+DS +SS+++E S SDS+ S S SE
Sbjct: 179 DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESE 228
Score = 26.2 bits (55), Expect = 4.4
Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Frame = +2
Query: 149 ASTAASDSEPTSLPSLPQEDKVAEETGDRIGNYSNEVNHVPIGEKNGFRRRSTYPPLSAS 328
+ +++ D++ +S S + + +E++ + +E G + S+ S+
Sbjct: 173 SESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSE 232
Query: 329 ILSNFEENFESLIDNLT-DADSLTSSTETEVFKSVGDSDSAC-SDESGYSEFLDGKES 496
+ + +S ++ + D+DS +SS+++E S DSDS+ S +S D +S
Sbjct: 233 DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDS 290
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 28.7 bits (61), Expect = 0.83
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +2
Query: 239 GNYSNEVNHVPIGEKNGFRRRSTYPPLSASILSNFEENFESLIDNLTDADSLTSSTETEV 418
G + V G++N ++R Y P + S L FE E L+ D+D+ + + +
Sbjct: 142 GRLKTRQDFVLKGQQNNWKR---YNPTTKSYLEEFESQKEKLVYLSADSDNTITELDEDK 198
Query: 419 FKSVGDSDSACSDESGYSEFLDGKES 496
+G A D++ Y K S
Sbjct: 199 IYIIG----AIVDKNRYKNLCQNKAS 220
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 571 CELIICTDFHEIATHDLNHNSVPNNAFLSIQELGVA 464
CE ++CT H + HD + NAFL+I L V+
Sbjct: 1047 CEPLLCTLCHLLVIHDSRTVGLVVNAFLAITPLLVS 1082
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 275 GEKNGFRRRSTYPPLSASILSNFEENFESLIDNLTDADSLTSSTE 409
GEK G RS + SA L + E NF S + D + + S +
Sbjct: 464 GEKVGIEYRSFFQKCSAEFLCSNEPNFRSQLTEFFDHNIIESKRD 508
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = +2
Query: 161 ASDSEPTSLPSLPQEDKVAEETGDRIGNYSNEVNHVPIGEKNGFRRRSTYPPLSASILSN 340
A+ EP + +L +E + + + GNY +VN + + E+ R+ Y +S +
Sbjct: 345 ANSQEPKLISNLAKEMGIYDTELENYGNYKAKVN-LAVYERLKHRKDGNYVVVSGITPTP 403
Query: 341 FEENFESLIDNLTDA 385
F E +++ L A
Sbjct: 404 FGEGKSTVVAGLVQA 418
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 535 ATHDLNHNSVPNNAFLSIQELGVA*FITAGAVAVTHTLEHFSFGARSQTVRIS--EVINQ 362
A +L H S+PN+ F S Q +G T + TL+ +S + IS E INQ
Sbjct: 44 ALENLEHRSIPNDLFHSSQPVGSP---TRNGDDIPSTLDLYSSDNAAIDTDISEDETINQ 100
Query: 361 R 359
R
Sbjct: 101 R 101
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = -2
Query: 231 SPVSSATLSSWGNDGREVGSESEAAVLAVSHPEETDPSSLSVTRKLLDNLHSVTFAAAVS 52
S SS++ SS + S S + S + SS S + S +F +S
Sbjct: 186 SSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMS 245
Query: 51 IISFVSTMLLVPNSCS 4
+F+ST+ + P+S S
Sbjct: 246 SSTFISTVTVTPSSSS 261
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +2
Query: 296 RRSTYPPLSASILSNFEENFESLIDN-LTDADSLTSSTETEVFKSVGDSDSACSDESGYS 472
+RST + + N + N+E+ L DA ++ S E EV K++ DS+ A ES S
Sbjct: 153 KRSTNRLSLLAFMRNQQLNYEAYETKLLEDASTIEKSLEKEV-KTIYDSNIASPKES--S 209
Query: 473 EFLDGKESII 502
+ +D ++I
Sbjct: 210 DAIDADHAMI 219
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 236 IGNYSNEVNHVPIGEKNGFRRRSTYPPLSASILSN-FEENFESLIDNLTDADSLTSSTET 412
IGN ++ + I + R R T PP S++ N +N+E L N+ +++ S E+
Sbjct: 231 IGNRDSKDTSISIQVERYPRTRLTKPPTSSAFYENDMSKNYECL--NIENSNVENKSMES 288
Query: 413 EVFKSV 430
+ +V
Sbjct: 289 DAVSTV 294
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = +2
Query: 248 SNEVNHVPIGEKNGFRRRSTYPPLSASILSNFEENFESL-IDNL-TDADSLTSSTETEVF 421
SN + HV R RS PLS +S L ID + T SL+ S F
Sbjct: 1110 SNSIRHVSGSTSRSTRTRSLSKPLSPEAVSELMSTEVVLSIDRIFTQTSSLSGSAIVSFF 1169
Query: 422 KSV 430
K++
Sbjct: 1170 KAL 1172
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 269 PIGEKNGFRRRSTYPPLSASILSNFEENFESLIDNLTDADSLT-SSTETEVFKSVGDSD 442
PIGEK F + P+ F+ N + L+ LTD T S T +F D D
Sbjct: 3 PIGEKKRFELEKSIEPIYTGGPVAFDSNEKILVTALTDRIIGTRSETGERLFSIKKDED 61
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 26.6 bits (56), Expect = 3.4
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Frame = +2
Query: 143 ETASTAASDSEPTSLPSLPQEDKVAEETGDRIGNYSNEVNHVPIGEKNGFRRRSTYPPLS 322
E + D + SL QED + + +G Y HV G R T P
Sbjct: 52 ECIVVSMDDKSKKARVSLRQEDIL-----NALGKYEETFRHVDFGPVYAALRNETCPKKI 106
Query: 323 ASILSNFEENFESLIDNL-----TDADSLTSSTETEVFKSV 430
+ILS +N ++ + D +TSST+ +V
Sbjct: 107 DAILSEVAKNPADYVERIGGNSNKDTIEITSSTKPHAQNAV 147
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.4
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +2
Query: 221 ETGDRIGNYSNEVNHVPIGEKNGFRRRSTYPPLSASILSNFEENFESLIDNLTDADSLTS 400
+ G +I YS H + + + T P+S L NF E + L D +
Sbjct: 102 KNGKQISQYSGPRKHDALVKYMRKQLLPTVKPISKDTLENFVEKADDLAVVAFFKDQKLN 161
Query: 401 STETEVFKSVGDS-DSACSDESGYSEFL 481
T TEV + + D A SD+ ++ L
Sbjct: 162 DTYTEVAEVMKDDFVFAASDDKELAKSL 189
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 197 PQEDKVAEE-TGDRIGNYSNEVNHVPIGEKNGFRR 298
P++ K + G+ + +Y EV VP E+N FRR
Sbjct: 26 PEKSKDKDNFNGEEVISYVGEVETVPAKEENVFRR 60
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -2
Query: 219 SATLSSWGNDGREVGSESEAAVLAVSHPEETDPSSLSVTRKLLDNLHSVTFAAAVSIISF 40
S+TLSS S S + + + PSS S + + S +F++ VS S
Sbjct: 318 SSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSS 377
Query: 39 VSTMLLVPNSCS 4
S+ L +S S
Sbjct: 378 TSSSTLTSSSSS 389
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 5.9
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +1
Query: 103 RHGQRRWICFFWMRDCQYRC 162
RH R W+C + +C + C
Sbjct: 197 RHAGRDWVCIIILYECTFGC 216
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 5.9
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Frame = +2
Query: 293 RRRSTYPPLSASILSNFEENFESLIDNLTDADSLTSSTETEVFKSVGDSDSACSDESGYS 472
R +S YP L+ S +S +NF + D L + S + +G ++++ S+ +
Sbjct: 508 RLKSLYPKLALSQMSQLVKNFYAFEDPLLQIEK--SLVLNKPIHQIG-AEASSSNNVKST 564
Query: 473 EFLDG-----KESIIGNTIMV*IMCRDFMKIGADYKFTVT 577
E L+G K ++ + + + DF+ + A+Y +T T
Sbjct: 565 ELLEGLANARKSALHEIFVKINLKIDDFLGL-AEYDWTTT 603
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 405 PKLKCSRVWVTATAPAVMNQATPSSWMERKALLGTLL 515
P L+ WV T + N+ +PSSW K +L L
Sbjct: 232 PNLQNVYDWVWCTYDELKNKLSPSSWDSVKNILSDRL 268
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/84 (22%), Positives = 36/84 (42%)
Frame = +2
Query: 206 DKVAEETGDRIGNYSNEVNHVPIGEKNGFRRRSTYPPLSASILSNFEENFESLIDNLTDA 385
+ V EE + +G Y ++HV +G K + + L SI + + + ++
Sbjct: 138 EMVPEEAENPLGGYGKTISHVLLGLKT--HKGTKQLKLDPSIYESLQR------EQVSTG 189
Query: 386 DSLTSSTETEVFKSVGDSDSACSD 457
D + T K VG SD+ ++
Sbjct: 190 DVIYIEANTGAVKRVGRSDAYATE 213
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.4 bits (53), Expect = 7.8
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 281 KNGFRRRSTYPPLSASILSNFEENFESL--IDNLTDADSLTSSTETEVFKSVGDS-DSAC 451
KN R T+ AS +N E+F + D TD+DSL S + E+F + D
Sbjct: 425 KNMASRIETFINDEAS--NNHREDFYGVKNSDTDTDSDSLADS-DDEIFLNRNQGIDEVE 481
Query: 452 SDESGYSEFLDGKE 493
DE+ + + L GK+
Sbjct: 482 FDETKFYDLLKGKD 495
>SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 155
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 290 FRRRSTYPPLSASILSNFEENFESLIDNL 376
FR+R + + IL NF E+F S + L
Sbjct: 47 FRKRMNHLSATKQILDNFNESFSSFLYGL 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,948
Number of Sequences: 5004
Number of extensions: 50576
Number of successful extensions: 211
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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