Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0346
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0876 - 32654209-32654238,32654357-32654672,32654833-326549... 34 0.12
08_02_1456 + 27239651-27239656,27239738-27239986 33 0.16
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 33 0.21
11_01_0068 + 551578-551661,552158-552274,557142-557210,557211-55... 31 0.86
01_03_0003 + 11509530-11512772 31 0.86
02_04_0115 - 19888252-19888406,19888507-19888573,19888867-198891... 31 1.1
12_01_0069 + 598704-598784,599161-599277,600681-600872,601004-60... 30 2.0
05_05_0098 + 22373384-22373522,22373566-22373772,22373879-223739... 29 2.6
11_06_0511 - 24434007-24436814 29 3.5
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 29 3.5
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 28 6.0
12_01_1038 - 10687702-10687851,10688725-10688985,10690942-106910... 28 8.0
10_08_1016 - 22262760-22264331 28 8.0
05_04_0211 + 19088656-19088965,19089911-19089987,19090964-190910... 28 8.0
01_06_1809 - 40029628-40030539 28 8.0
>01_06_0876 -
32654209-32654238,32654357-32654672,32654833-32654901,
32655238-32655275,32655418-32655478,32655550-32655617,
32655729-32655889,32656687-32656751,32656883-32656956,
32658158-32658245,32658800-32658879,32659168-32659224,
32659332-32659404,32659524-32659762,32659846-32660025,
32660150-32660440
Length = 629
Score = 33.9 bits (74), Expect = 0.12
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +2
Query: 281 KNGFRRRSTYPPLSASILSNFEENFESLIDNLTDADSLTSSTETEVFKSVGDSDSAC-SD 457
K G+RR P L + + L++ TD D L+ + EV + + D S+C S
Sbjct: 500 KGGYRRVIQRPIDFEWDLITYTDEKIPLVE--TDLDVLSKTKPLEVNELLSDGISSCTSH 557
Query: 458 ESGYSEFLDGKESIIGNTIMV 520
+SG LD ESI G +++V
Sbjct: 558 DSGLEASLDASESINGASLVV 578
>08_02_1456 + 27239651-27239656,27239738-27239986
Length = 84
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 34 RDKRNNRYSSSKRDRMQIV**LPRHGQRRWICFFWMRDCQYRC 162
+D+ N+ Y S DR + + G+ RWI W ++CQ RC
Sbjct: 21 QDRDNDDYYSKGYDRAWVRRICFQRGRERWIHHRWAQECQIRC 63
>08_02_1508 + 27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 33.1 bits (72), Expect = 0.21
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Frame = +2
Query: 143 ETASTAASDSEPTSLPSLPQED-KVAEETGDRIGNYS--NEVNHVPIGEKNGFRRRSTYP 313
ET S +S + LPS+P + +V + GD+ +YS ++ ++V G + +
Sbjct: 1122 ETVSYGSSATSREMLPSIPDKSMRVQQPQGDK-SSYSSISQEDNVKQGSQAALQGSGNEQ 1180
Query: 314 PLSASILSNFEENFESLI-DNLTDADSLTSSTETEVFKSVGDSDSACSDESGYSEFLDGK 490
P +L+N +E + L +D S+ TE KS + +++ D S DG
Sbjct: 1181 PKKRDLLANADEKIRGTTGEALQKSDEGRISSNTEQMKS--NRNNSKPDGSTEPTSFDGN 1238
Query: 491 E 493
E
Sbjct: 1239 E 1239
>11_01_0068 +
551578-551661,552158-552274,557142-557210,557211-557402,
557558-557650
Length = 184
Score = 31.1 bits (67), Expect = 0.86
Identities = 28/140 (20%), Positives = 57/140 (40%)
Frame = +2
Query: 44 EIIDTAAANVTECKLSSNFLVTXXXXXXXXXXCETASTAASDSEPTSLPSLPQEDKVAEE 223
++ ++AAN T + ++ + + ST++S P + +K
Sbjct: 22 DVTKSSAANETSILVDASKYIKELKDKVSQEPEQLGSTSSSMPMPRLIEHKMCREKKHNA 81
Query: 224 TGDRIGNYSNEVNHVPIGEKNGFRRRSTYPPLSASILSNFEENFESLIDNLTDADSLTSS 403
+ G V+ V + +K GFR + +L++ E FE L ++ DAD +
Sbjct: 82 VLNTYGCMQVSVSSVELEKKIGFRINVSMEKSQPELLTSVLEAFEELGLDVLDADVSCAD 141
Query: 404 TETEVFKSVGDSDSACSDES 463
+++G S S ++ S
Sbjct: 142 DTAFRLEALGSSQSEAAETS 161
>01_03_0003 + 11509530-11512772
Length = 1080
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 413 EVFKSVGDSDSACSDESGYSEFLDGKESIIGNTIM 517
E + S+ S C+D SGYSE +DG S N+ +
Sbjct: 963 ECWVSINHSQINCTDTSGYSEIVDGNGSECPNSTL 997
>02_04_0115 -
19888252-19888406,19888507-19888573,19888867-19889101,
19889179-19889255,19889350-19889415,19889517-19889565,
19889651-19889701,19889799-19889851,19889973-19890024,
19890126-19890214,19890308-19890393,19890603-19890659,
19890742-19890919,19891852-19891908,19892209-19892439
Length = 500
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +2
Query: 299 RSTYPPLSASILSNFEENFESLIDNLTDAD--SLTSSTETEVFKSVGDSDSACSDESGYS 472
RST P+ ++S F+E FE L T + ++ TEVF + CS+
Sbjct: 337 RSTMGPIDVYLVSQFDEKFEDLGGGATPSGHANVPKHQPTEVFNTTNAGVGQCSNSVAVD 396
Query: 473 EFLDGKESI 499
+ ++I
Sbjct: 397 NNIQHSQTI 405
>12_01_0069 +
598704-598784,599161-599277,600681-600872,601004-601018
Length = 134
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Frame = +2
Query: 203 EDKVAEETGDRIGNYSNE-------VNHVPIGEKNGFRRRSTYPPLSASILSNFEENFES 361
+DKV++E +++G+ S+ V+ V + +K GFR + +L++ E FE
Sbjct: 45 KDKVSQEP-EQLGSTSSSMPMPRVSVSSVELEKKRGFRINVSMEKSQPELLTSVLEAFEE 103
Query: 362 LIDNLTDADSLTSSTETEVFKSVGDSDS 445
L ++ DAD + F++ G S S
Sbjct: 104 LGLDVLDADVSCADDTAFRFEAFGSSQS 131
>05_05_0098 +
22373384-22373522,22373566-22373772,22373879-22373953,
22374611-22374744,22375189-22375674,22375854-22376621,
22377367-22377594,22378294-22378773
Length = 838
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 255 SLE*LPILSPVSSATLSSWGND 190
SL LP++ P SSAT S WG D
Sbjct: 25 SLRPLPLIFPESSATASGWGAD 46
>11_06_0511 - 24434007-24436814
Length = 935
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = -1
Query: 448 GAVAVTHTLEHFSFGARSQTVRISEVINQRFKVLFKVAQDTSAERRVRRSTSE 290
G A+ H LE SF RS T ISE+IN ++ + A+ + R+RR SE
Sbjct: 32 GRSALEHGLEGGSFLIRSLTRVISEIINSNDILVLRQAE---LQGRLRRIESE 81
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = -2
Query: 249 E*LPILSPVSSATLSSWGNDGREVGSESEAAVL----AVSHPEETDPSSLSVTRKLLDNL 82
E +P+L P+ + L+ +D + E V+ H + DP SV KLLD L
Sbjct: 1210 ENVPLLFPIFESYLNKKASDEEKYDLVREGVVIFTGALAKHLSKDDPKVHSVVEKLLDVL 1269
Query: 81 HSVTFAAAVSIISFVSTMLL 22
++ + A ++ +S +++
Sbjct: 1270 NTPSEAVQRAVSDCLSPLMV 1289
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 188 PSLPQEDKVAEETGDRIGNYSN--EVNHVPIGEKNGFRRRSTYPP 316
P+LP+ + + D + +N + H P+G+ +GF S+ PP
Sbjct: 193 PALPRLEGMELHRKDHLPKNANIMQAQHYPMGKSSGFNTGSSCPP 237
>12_01_1038 -
10687702-10687851,10688725-10688985,10690942-10691011,
10691096-10691289
Length = 224
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 221 ETGDRIGNYSNEVNHVPIGEKNGFRRRSTYPPLSASILSNFEENFESLIDNLTD 382
ET IGN+ + + V I NG S+Y L + + E N+ D+ D
Sbjct: 92 ETIIEIGNWMHHIYEVNIMNSNGNPDSSSYESLVSDFMDAVERNWHETYDSDDD 145
>10_08_1016 - 22262760-22264331
Length = 523
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 687 RIHYL*-LKHRIYNAKVVLVCKLQVAQIKFNID*RNEHVTVN 565
R+H+L K+R+YN K L K V I +I+ + +T++
Sbjct: 302 RVHHLEEKKYRVYNFKAALTSKQLVEYIVLDIEHESPEITID 343
>05_04_0211 +
19088656-19088965,19089911-19089987,19090964-19091047,
19091130-19091243,19091861-19091947,19092000-19092107,
19092643-19092710,19093044-19093131,19093225-19093298,
19093454-19093817,19094024-19094070,19094154-19094235,
19095698-19095817
Length = 540
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 266 VPIGEKNGFRRR-STYPPLSASILSNFEENFESLIDNLTDADS 391
VP+ +K R S P L+A +LSN EE ESL+ ++ S
Sbjct: 369 VPLPDKTEPNREVSGAPQLTAPLLSNNEERVESLVVDIEKPQS 411
>01_06_1809 - 40029628-40030539
Length = 303
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 184 GGRFGVRSSGTGSLASRRNRSIVAVRDEEVTRQFAFCHVCCCCI 53
GG G G G +R+N D+ R+ HVCC C+
Sbjct: 216 GGGGGGNGGGGGGGGARKNGDGDDDEDDGEGREEEMVHVCCVCM 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,388,475
Number of Sequences: 37544
Number of extensions: 315645
Number of successful extensions: 1083
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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