Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0346
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25195| Best HMM Match : DnaJ (HMM E-Value=1.9)                      33   0.29 
SB_53427| Best HMM Match : RVT_1 (HMM E-Value=0.031)                   29   3.5  
SB_12717| Best HMM Match : CheR (HMM E-Value=5.6)                      29   3.5  
SB_38415| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_9369| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  
SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_39986| Best HMM Match : CNH (HMM E-Value=6.99949e-42)               28   8.1  

>SB_25195| Best HMM Match : DnaJ (HMM E-Value=1.9)
          Length = 78

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 338 NFEENFESLIDNLTDADSLTSSTETEVFKSVGDSDSACSDESGYSE 475
           N  E   ++I +LT+  +    ++ EVF  +G+S  A SD S  S+
Sbjct: 31  NKPEKLRAIIKHLTEQRNSEDGSDDEVFNEIGESSDAFSDSSSDSD 76


>SB_53427| Best HMM Match : RVT_1 (HMM E-Value=0.031)
          Length = 969

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 143 ETASTAASDSEPTSLPSLPQEDKVAEETGDRIGNYSNEVNHVPIGEKNGFRRRSTYPPL 319
           ++A+  A  S  ++ PS P   +   ++   I   S E +  PI   + F RRS Y P+
Sbjct: 106 QSATVVAVYSPTSTAPSSPNTPRHQTDSRLPIAKTSIEASPQPISYSSPFARRSLYSPI 164


>SB_12717| Best HMM Match : CheR (HMM E-Value=5.6)
          Length = 685

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 359 SLIDNLTDADSLTSSTETEVFKSVGDSDS 445
           S + +L D+  L  +T TEVF SVG  DS
Sbjct: 319 SEVKDLLDSGDLVMATATEVFYSVGKKDS 347


>SB_38415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +2

Query: 263 HVPIGEKNGFRRRSTY-PPLSASILSNFEENFESLIDNLTDADSLTSSTETEVFKSVGDS 439
           H P+  +NG R    Y PP + ++ +N    F  L+D    A    SST  ++F      
Sbjct: 746 HRPVQRRNGQRNIIWYNPPFNKNVSTNIGREFLKLVDKFFPA----SSTLKKIFNR-NTL 800

Query: 440 DSACSDESGYSEFLDGKESIIGN 508
             + S      + +DG   II N
Sbjct: 801 KISYSCMPNVKQLIDGHNKIILN 823


>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 395 TSSTETEVFKSVGDSDSACSDESGYSE 475
           TSSTE +  +  G ++S C+DES   +
Sbjct: 444 TSSTEKKTTRDEGSTESGCNDESNLGQ 470


>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -1

Query: 193 RWEGGRFGVRSSGTGSLASRRNRSIVAVRDEEVTRQF 83
           +W G R G+R SGTGS  S   +S++    E+ T +F
Sbjct: 552 KW-GWRNGLRVSGTGSDESENTQSVIEEWREDETFEF 587


>SB_9369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 240 PILSPVSSATLSSWGNDGREVGSESEAAVLAVSHPEETDPSSLS 109
           P+  P+ S+T   WGN G      +  A+LA     ET  S+ S
Sbjct: 57  PVAPPIVSST-QDWGNQGSLTNQNTSQAILANPIALETGSSNQS 99


>SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 143 ETASTAASDSEPTSLPSLPQEDKVAEETGDRIGNYSNE 256
           ET     S  EPT +   PQED++  E+ + + + S++
Sbjct: 198 ETVEEPPSIDEPTPVAESPQEDELPNESDESLKSQSSQ 235


>SB_39986| Best HMM Match : CNH (HMM E-Value=6.99949e-42)
          Length = 952

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 396 LLAPKLKCSRVWVTATAPAVMNQATPSSWMERKALLGTLL 515
           LLAP  K  + WVTA     ++Q   +S  + K LLG +L
Sbjct: 515 LLAPSFKDKQKWVTA-LELTLDQIKKTSDKDGKKLLGNIL 553


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,232,305
Number of Sequences: 59808
Number of extensions: 371267
Number of successful extensions: 1423
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)