Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0346
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    35   0.063
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    28   5.4  
AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine re...    28   5.4  
U88170-9|AAB42243.2|  348|Caenorhabditis elegans Serpentine rece...    28   7.2  
U64852-2|ABH03524.1|  975|Caenorhabditis elegans Uncoordinated p...    28   7.2  
U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated p...    28   7.2  
AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.     28   7.2  
Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U11279-2|AAW88400.1|  714|Caenorhabditis elegans Sensory axon gu...    27   9.5  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    27   9.5  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      27   9.5  

>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +2

Query: 143 ETASTAASD--SEPTSLPSLPQEDK-VAEETGDRIGNYSNEVNHVPIGEKNGFRRRSTYP 313
           +TASTA+S   SE +S  +    +K  +E +G+   +  +E + V +GE+NG   + + P
Sbjct: 435 KTASTASSHKASESSSESNAESTEKQTSESSGNESDSEESEDSEVDVGEENGSEVKESRP 494

Query: 314 PLSASILSN 340
             SA  +S+
Sbjct: 495 QTSADTISS 503


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 302 STYPPLSASILSNFEENFESLIDNLTDADSLTSSTETEVFKSVGDSDSACSDESGYSEFL 481
           ST    SAS ++       S I   T++ ++  STE+ V ++   S S+ S  SG +E  
Sbjct: 629 STISGSSASTVTGSTVTEASTISGSTESSTIPGSTESTVSEASTVSGSSVSTVSGSTEST 688

Query: 482 D-GKESIIGNT 511
             G  ++ G+T
Sbjct: 689 SAGASTVSGST 699


>AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine
           receptor, class w protein6 protein.
          Length = 391

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 514 NSVPNNAFLSIQELGVA*FITAGAVAVTHTLEHFSFGARS-QTVRISEVINQRFKVLFKV 338
           N  PNN    +  + ++ F +  A  +  T+EHF FG    QT++   +      +LF +
Sbjct: 269 NDKPNNTSSFVIAMAISTFASEFAYGLVFTVEHFIFGFEMFQTLKTLFMHLNSITLLFLM 328

Query: 337 AQDTS 323
           A   S
Sbjct: 329 ASSFS 333


>U88170-9|AAB42243.2|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein51 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 295 SEPVFLANRDMIYFIRIITNSITGFFCNFV 206
           S P FL    ++ FI II  ++ GF+C FV
Sbjct: 27  SSPNFLKTSAIVEFIVIIPINLFGFYCIFV 56


>U64852-2|ABH03524.1|  975|Caenorhabditis elegans Uncoordinated
           protein 83, isoform b protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 326 SILSNFEENFESLIDNLTDADSLTSSTETE-VFKSVGDSDSACSDESGYS 472
           ++L   E  +ES++D     DS TSS+E + V +S      +   + GYS
Sbjct: 223 NVLPFAENEYESIMDGRVTVDSCTSSSEDQMVEQSTNKKWESVLQDVGYS 272


>U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated
           protein 83, isoform a protein.
          Length = 1041

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 326 SILSNFEENFESLIDNLTDADSLTSSTETE-VFKSVGDSDSACSDESGYS 472
           ++L   E  +ES++D     DS TSS+E + V +S      +   + GYS
Sbjct: 289 NVLPFAENEYESIMDGRVTVDSCTSSSEDQMVEQSTNKKWESVLQDVGYS 338


>AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.
          Length = 1041

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 326 SILSNFEENFESLIDNLTDADSLTSSTETE-VFKSVGDSDSACSDESGYS 472
           ++L   E  +ES++D     DS TSS+E + V +S      +   + GYS
Sbjct: 289 NVLPFAENEYESIMDGRVTVDSCTSSSEDQMVEQSTNKKWESVLQDVGYS 338


>Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical
           protein R06C7.8 protein.
          Length = 987

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +2

Query: 293 RRRSTYPPLSASILSNFEENFESLIDNLTDADSLTSSTETEVFKSVGDSDSACSDE 460
           +R   Y PL A+  ++      S I+N     +L+S T++   K V DSD A  DE
Sbjct: 296 KRSRIYSPLVATKDAH-RPALRSKIENPPATVTLSSDTKSASEKDVSDSDDADDDE 350


>U11279-2|AAW88400.1|  714|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform b protein.
          Length = 714

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 222 SSATLSSWGNDGREVGSESEAAVLAVSHPEETDPSSLSVTRKLLDN 85
           S   LSS G  G E   E E    + SH EE +  S  + RK+ D+
Sbjct: 208 SLRNLSSGGQGGEEEEEEPEEDEESESHEEEENSESDDLPRKVEDD 253


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
            guidance protein 2,isoform a protein.
          Length = 2886

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 222  SSATLSSWGNDGREVGSESEAAVLAVSHPEETDPSSLSVTRKLLDN 85
            S   LSS G  G E   E E    + SH EE +  S  + RK+ D+
Sbjct: 2380 SLRNLSSGGQGGEEEEEEPEEDEESESHEEEENSESDDLPRKVEDD 2425


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 222  SSATLSSWGNDGREVGSESEAAVLAVSHPEETDPSSLSVTRKLLDN 85
            S   LSS G  G E   E E    + SH EE +  S  + RK+ D+
Sbjct: 2408 SLRNLSSGGQGGEEEEEEPEEDEESESHEEEENSESDDLPRKVEDD 2453


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,282,667
Number of Sequences: 27780
Number of extensions: 281831
Number of successful extensions: 1002
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)