Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0346
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t...    29   2.9  
At2g22140.1 68415.m02630 expressed protein ; expression supporte...    29   2.9  
At5g13610.1 68418.m01576 expressed protein                             29   3.8  
At2g25530.1 68415.m03056 AFG1-like ATPase family protein contain...    28   6.7  
At2g07674.1 68415.m00900 expressed protein                             28   6.7  
At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing ...    27   8.8  
At4g31980.1 68417.m04547 expressed protein contains Pfam profile...    27   8.8  
At3g61300.1 68416.m06860 C2 domain-containing protein anthranila...    27   8.8  
At1g02550.1 68414.m00206 invertase/pectin methylesterase inhibit...    27   8.8  

>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
           enhancer of zeste-like protein 1(EZA1) (GI:4185507)
           [Arabidopsis thaliana]; similar to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 856

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 155 TAASDSEPTSLPSLPQEDKVAEET-GDRIGNYSNEVN 262
           TAASD++ + + S+P  D+  + T GD+ G   N+VN
Sbjct: 404 TAASDTKMSFVNSVPSLDQALDSTKGDQGGTTDNKVN 440


>At2g22140.1 68415.m02630 expressed protein ; expression supported
           by MPSS
          Length = 506

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -2

Query: 492 SFPSKNSE*PDSSLQALSLSPTLLNTSVSVLEVRLSASVRLSIRDSKFSSKLLKILALRG 313
           S P+   + P+SS   + +  T L+   SV++    +    S R+ KFS K  +I++L  
Sbjct: 37  SDPTPQKQPPESSFTPIFVPETPLSDDFSVVKCSFGSRALASNREDKFSGK--RIISLDS 94

Query: 312 GYVDLRR 292
            + D  R
Sbjct: 95  EFEDSPR 101


>At5g13610.1 68418.m01576 expressed protein
          Length = 402

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 152 STAASDSEPTSLPSLPQEDKVAEETGDRIGNYSNEV--NHVPIGEKNGFRRRSTYPPLSA 325
           S   S  +P+SLPSLP    +   +      +SN V  ++ PI +  GFR   T   +S+
Sbjct: 22  SIFTSQQKPSSLPSLPFHFSLRSSSNIPTRCFSNVVAKSNSPIYDFQGFRNLFTERAISS 81

Query: 326 S 328
           S
Sbjct: 82  S 82


>At2g25530.1 68415.m03056 AFG1-like ATPase family protein contains
           Pfam profile: PF03969 AFG1-like ATPase
          Length = 655

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 251 NEVNHVPIGEKNGFRRRSTYPPLSASILSNFEENFESLIDNLTDADSLTSSTETEVFKSV 430
           +EV++  +  KN         PL+ ++L  FE+ +  + D       +TS+T   +F   
Sbjct: 428 SEVDYRRVAAKNSAENVHYLWPLNDAVLEEFEKMWRQVTDQY--GGEITSATLPVMFGRT 485

Query: 431 GDSDSACSDESGYS-EFLDGK 490
            +   +CS  + ++ E+L G+
Sbjct: 486 VEVPESCSGVARFTFEYLCGR 506


>At2g07674.1 68415.m00900 expressed protein
          Length = 251

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 243 LPILSPVSSATLSSWGNDGREVG--SESEAAVLAVSHPEETDPS 118
           LP   P  S + S W  D  E+G   ES++     S  EE +PS
Sbjct: 37  LPSTGPSGSGSSSMWEEDSFELGVLEESDSPPAGGSRTEEGEPS 80


>At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing
           protein similar to SP|Q9Y4I5 Tesmin
           (Metallothionein-like 5, testis-specific) {Homo
           sapiens}; contains Pfam profile PF03638:
           Tesmin/TSO1-like CXC domain
          Length = 408

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 228 PVSSATLSSWGNDGREVGSESE--AAVLAVSHPEETDPSS 115
           P+S AT +   ++  E+GSE E  A V      E+TD SS
Sbjct: 285 PISPATRALMCDEEHEIGSEKETSARVKTSQEKEDTDTSS 324


>At4g31980.1 68417.m04547 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 680

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +2

Query: 461 SGYSEFLDGKESIIGNTIMV*IMCRDFMKIGADYKFTVTCSFLQSILNFICATWSLHTRT 640
           S Y       + I GN++M+  +CRD + I     F V       +LN+    +   T +
Sbjct: 396 SHYPRLRGENDRIFGNSMMITDVCRDMILIENQLPFFVVKEIFLLLLNY----YQQGTPS 451

Query: 641 TLAL*IRCFSY 673
            + L  R FSY
Sbjct: 452 IIQLAQRHFSY 462


>At3g61300.1 68416.m06860 C2 domain-containing protein anthranilate
           phosphoribosyltransferase (fragment) - Pisum sativum,
           PIR:T06460
          Length = 972

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 164 SDSEPTSLPSLPQEDKVAEETGDRIGNY-SNEVNHVPIGEKNGFRRRSTYPPLSASIL 334
           +D+    +P+L    K+  ++  +  N  +NE NH P G +  F+ +   PP S + L
Sbjct: 134 TDNPSPKVPNLISTKKIPSKSRHKFHNIPTNESNHSPRGNQQSFQPQPP-PPQSQTAL 190


>At1g02550.1 68414.m00206 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Lycopersicon esculentum SP|Q43143, Arabidopsis thaliana
           SP|Q43867; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 242

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +2

Query: 323 ASILSNFEENFESLIDNLTDADSLTSSTETEVFKSVGDSDSA----CSDESGYSEFLD 484
           A +L    +N+ESL+D+L DA       + E  +SV  +  A    CSD    S  L+
Sbjct: 159 ADVLDLCVDNYESLLDDLKDASVAVDDGDFERLESVVSAAIADVVTCSDAFAESSELE 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,362,318
Number of Sequences: 28952
Number of extensions: 262732
Number of successful extensions: 983
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)