Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0344
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 268 LICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALL 375
           ++CF   ++   C+T  G+Y+  +    + S + LL
Sbjct: 421 IVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLL 456


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 268 LICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALL 375
           ++CF   ++   C+T  G+Y+  +    + S + LL
Sbjct: 474 IVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLL 509


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 638 PLLYSILNPETNSLSPSAKSKGVR 567
           P++YSI N E         +KG R
Sbjct: 322 PIIYSIFNTEFREAFKRILTKGAR 345


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 637 LFYIQY*IQKLTLFHLQQNQKEFDLF 560
           L+Y Q   +   LF L  + K+FD+F
Sbjct: 99  LYYPQLLREMSALFKLFYHAKDFDIF 124


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 637 LFYIQY*IQKLTLFHLQQNQKEFDLF 560
           L+Y Q   +   LF L  + K+FD+F
Sbjct: 99  LYYPQLLREMSALFKLFYHAKDFDIF 124


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 328 IVIIAGWSSNSNYALLGGLRSVAQTIS 408
           ++ +  W+S  N  +   L +V QTIS
Sbjct: 16  MIHLIAWASLENTGISDRLENVTQTIS 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,342
Number of Sequences: 438
Number of extensions: 1482
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)