Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0343
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   2.8  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    25   2.8  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   3.7  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   3.7  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    24   6.4  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    24   8.5  

>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 325 LSCLQTRNPSRYSSHTDQYDLNYFTVN 245
           +S L++++ SRY+SH D   LN +  N
Sbjct: 197 ISHLKSKSRSRYASHPDLQALNTWMTN 223


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 328 PLSCLQTRNPSRYSSHTDQYDLNYF 254
           PL+ ++T NP+ +SS+T   D+ +F
Sbjct: 442 PLATMKTCNPAVFSSNTSLDDMFFF 466


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = -1

Query: 230 NQLRCI*KNKYVYSSIFKHTKVKLNLKSARIEIPTSNVRSYNVHFFF*FYVGNGICVFNF 51
           N   C     Y+ ++ F  T+  +N  SA +  P       N+      Y G GICV+  
Sbjct: 194 NMTLCNTDYPYLVNTCFNGTQYPVNCNSA-LRTPFGGATCRNIG-----YKGQGICVYTN 247

Query: 50  VSIFQPANNPLVPNS 6
            S    A++ ++ N+
Sbjct: 248 DSRIPVADDHVIVNT 262


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
 Frame = -1

Query: 260 LFYCKLSFFLNQLRCI*KNKYVYSSIFKHTKVKLNLKSARIEIP-----TSNVRSYNVHF 96
           LF+    FF      I    + +  +F HT V    +  R+++P     T  + ++   F
Sbjct: 21  LFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFR--RLKLPYHHHHTFTIEAFFYWF 78

Query: 95  FF*FYVGNGICVFNFVSIFQPANNPLVPNSC 3
           FF F+  +    F+      P ++ +VP  C
Sbjct: 79  FFFFFFFSHCRRFHIAIFIHPYDSNVVPFFC 109


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 352 PSRRRIPPPLSCLQT-RNPSRYSSHTDQY 269
           PSR + PPP S L + R+  R+ S  +++
Sbjct: 140 PSRHQSPPPSSVLASQRHHRRHDSELEEF 168


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 150 KRANRDSNFKCPKLQCTLFFLILCRQRHMRF*F 52
           K   +DSN KC K Q     L    + ++ F F
Sbjct: 260 KNIKKDSNVKCSKKQILFSLLYFSSEVYLSFVF 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,739
Number of Sequences: 5004
Number of extensions: 31164
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)