Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0343
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0192 + 6295239-6295279,6295548-6295639,6295839-6296024,629...    29   1.5  
03_01_0105 - 836347-836769,837740-837937                               27   4.5  
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757...    27   4.5  
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743...    27   6.0  

>03_02_0192 +
           6295239-6295279,6295548-6295639,6295839-6296024,
           6296531-6296672,6296729-6296849
          Length = 193

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 364 ADAKPSRRRIPPPLSCLQTRNPS 296
           A+A P   R+PPP+ C+++R P+
Sbjct: 7   AEAFPLSSRVPPPVYCMRSRVPN 29


>03_01_0105 - 836347-836769,837740-837937
          Length = 206

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/26 (34%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = -1

Query: 197 VYSSIFKHTKV--KLNLKSARIEIPT 126
           +Y+ +++H K+  ++NLK+ R+E+ T
Sbjct: 49  IYTPVYEHMKIDIRMNLKARRVELKT 74


>01_06_0969 -
           33472588-33474480,33475543-33475623,33475692-33475740,
           33475866-33476281,33477208-33477447
          Length = 892

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/26 (34%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = -1

Query: 197 VYSSIFKHTKV--KLNLKSARIEIPT 126
           +Y+ +++H K+  ++NLK+ R+E+ T
Sbjct: 63  IYTPVYEHMKIDIRMNLKARRVELKT 88


>03_02_0320 +
           7437528-7437623,7437725-7437772,7438885-7438994,
           7439651-7439735,7439839-7440115,7440296-7440454,
           7440563-7440666,7440930-7441168,7441265-7441583,
           7441665-7442069,7442157-7442294,7442376-7442555
          Length = 719

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 365 SRRQAKPAPNSTASVMPSNSKSFTIFI 285
           S   A  +P+S + V PSNS+ F  F+
Sbjct: 587 SNNSASSSPDSDSDVHPSNSEGFQCFL 613


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,412,055
Number of Sequences: 37544
Number of extensions: 168733
Number of successful extensions: 397
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)