Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0343
         (365 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.29 
SB_58144| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.0  
SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015)                    27   4.7  
SB_36364| Best HMM Match : Ion_trans (HMM E-Value=0.82)                27   6.2  
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)                     26   8.1  

>SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1136

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 198 CIQFDF*THKGKAEFEKRANRDSNFKCPKLQCTLFFLILCR 76
           C Q +  TH G+  + K AN++   +CPK Q  +   + C+
Sbjct: 595 CTQENSATHCGRCRYAKAANKECKRECPKGQLAIGVTLDCK 635


>SB_58144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 101 VHCSFGHLKLESRFARFSNSALP 169
           VHCSFG   L  ++A+ SN ALP
Sbjct: 55  VHCSFGERTLRFKYAQLSN-ALP 76


>SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015)
          Length = 504

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 343 RRIPPPLSCLQTRNPSRYSSHT 278
           R  PPP+ CL  RN S  + HT
Sbjct: 228 RYAPPPVECLTYRNLSEANRHT 249


>SB_36364| Best HMM Match : Ion_trans (HMM E-Value=0.82)
          Length = 318

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 195 YILIFLYTPKLI*KK*QFTVK*FRSYWSVCD 287
           Y+ + LYT + I K   F +  F++YW++ D
Sbjct: 33  YLYVTLYTMETIWKIVAFRIYYFKAYWNLLD 63


>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
          Length = 1481

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 304 NPSRYSSHTDQYDLNYFTVNCHFF*INFGVYKKISMYTV 188
           N S YSS+ ++Y+LN +  N + +  N   Y   + Y V
Sbjct: 284 NNSTYSSYNNRYNLNSYNNNNNTY--NINTYNNNNTYNV 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,109,011
Number of Sequences: 59808
Number of extensions: 207461
Number of successful extensions: 591
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)