Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0343
         (365 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       27   3.1  
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    27   3.1  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    27   3.1  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    27   3.1  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    27   3.1  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    27   3.1  
AF040652-2|AAB95019.1|  221|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    26   7.2  
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    26   9.5  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      26   9.5  
AF026204-2|AAB71251.2|  247|Caenorhabditis elegans Hypothetical ...    26   9.5  

>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -3

Query: 225 TSVYIKK*VCIQFDF*THKGKAEFEKRANRDSNFKCPKLQCTLFFLILCRQRHMRF 58
           T VY  K   IQ +F + + KAE   +A+ D N   P+ Q T+ ++       +RF
Sbjct: 715 TGVYTVK---IQNEFGSIESKAELFVQADPDKNHVAPEFQATIEYVECDEGEEVRF 767


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
           protein 89, isoform e protein.
          Length = 5992

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -3

Query: 225 TSVYIKK*VCIQFDF*THKGKAEFEKRANRDSNFKCPKLQCTLFFLILCRQRHMRF 58
           T VY  K   IQ +F + + KAE   +A+ D N   P+ Q T+ ++       +RF
Sbjct: 715 TGVYTVK---IQNEFGSIESKAELFVQADPDKNHVAPEFQATIEYVECDEGEEVRF 767


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
           protein 89, isoform a protein.
          Length = 6632

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -3

Query: 225 TSVYIKK*VCIQFDF*THKGKAEFEKRANRDSNFKCPKLQCTLFFLILCRQRHMRF 58
           T VY  K   IQ +F + + KAE   +A+ D N   P+ Q T+ ++       +RF
Sbjct: 715 TGVYTVK---IQNEFGSIESKAELFVQADPDKNHVAPEFQATIEYVECDEGEEVRF 767


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
           protein 89, isoform g protein.
          Length = 7122

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -3

Query: 225 TSVYIKK*VCIQFDF*THKGKAEFEKRANRDSNFKCPKLQCTLFFLILCRQRHMRF 58
           T VY  K   IQ +F + + KAE   +A+ D N   P+ Q T+ ++       +RF
Sbjct: 715 TGVYTVK---IQNEFGSIESKAELFVQADPDKNHVAPEFQATIEYVECDEGEEVRF 767


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
           protein 89, isoform f protein.
          Length = 7441

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -3

Query: 225 TSVYIKK*VCIQFDF*THKGKAEFEKRANRDSNFKCPKLQCTLFFLILCRQRHMRF 58
           T VY  K   IQ +F + + KAE   +A+ D N   P+ Q T+ ++       +RF
Sbjct: 715 TGVYTVK---IQNEFGSIESKAELFVQADPDKNHVAPEFQATIEYVECDEGEEVRF 767


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
           protein 89, isoform b protein.
          Length = 8081

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -3

Query: 225 TSVYIKK*VCIQFDF*THKGKAEFEKRANRDSNFKCPKLQCTLFFLILCRQRHMRF 58
           T VY  K   IQ +F + + KAE   +A+ D N   P+ Q T+ ++       +RF
Sbjct: 715 TGVYTVK---IQNEFGSIESKAELFVQADPDKNHVAPEFQATIEYVECDEGEEVRF 767


>AF040652-2|AAB95019.1|  221|Caenorhabditis elegans Hypothetical
           protein T05A8.2 protein.
          Length = 221

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 352 PSRRRIPPPLSCLQTRNPSRYSSHTDQY 269
           PS+ +IPP L  ++     RY+S T+++
Sbjct: 149 PSQMKIPPKLPSVRKTKQYRYNSKTEKF 176


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = -3

Query: 135 DSNFKCPKLQ----CTLFFLILCRQRHMRF 58
           DSN KCPK +    C L F +  R R  +F
Sbjct: 391 DSNLKCPKFECQWKCALIFNLPHRPREYKF 420


>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
           protein C47D12.1c protein.
          Length = 4053

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 334 PPPLSCLQTRNPSRYSSHTDQY 269
           PPPL+ ++ RN  +Y  HT ++
Sbjct: 575 PPPLAIVEARNLVKYIMHTCKF 596


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical
           protein C47D12.1b protein.
          Length = 4061

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 334 PPPLSCLQTRNPSRYSSHTDQY 269
           PPPL+ ++ RN  +Y  HT ++
Sbjct: 575 PPPLAIVEARNLVKYIMHTCKF 596


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical
           protein C47D12.1a protein.
          Length = 4064

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 334 PPPLSCLQTRNPSRYSSHTDQY 269
           PPPL+ ++ RN  +Y  HT ++
Sbjct: 575 PPPLAIVEARNLVKYIMHTCKF 596


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 334 PPPLSCLQTRNPSRYSSHTDQY 269
           PPPL+ ++ RN  +Y  HT ++
Sbjct: 575 PPPLAIVEARNLVKYIMHTCKF 596


>AF026204-2|AAB71251.2|  247|Caenorhabditis elegans Hypothetical
           protein C30E1.6 protein.
          Length = 247

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 151 FKFSFT-FVCLKIELYTYLFFYIHRS*FKKNDNLQ*NSSDHIGQCVMNIV 297
           F  SF+ F+  K+++  Y FFYI R    ++      +   IG C + I+
Sbjct: 122 FSISFSIFLWAKLQVLIYFFFYIVRKAIIEHKTF---TKSFIGSCTLLII 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,638,894
Number of Sequences: 27780
Number of extensions: 176072
Number of successful extensions: 444
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)