Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0343
         (365 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   6.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   8.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   8.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 60  NAYAVAYIKLKKKVYIVASD 119
           N Y + YI+L  KV  VA +
Sbjct: 515 NVYGLPYIRLIPKVTAVAGE 534


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 60  NAYAVAYIKLKKKVYIVASD 119
           N Y + YI+L  KV  VA +
Sbjct: 515 NVYGLPYIRLIPKVTAVAGE 534


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -1

Query: 206 NKYVYSSIFKHTKVKLNLKSARIEIPTSNVRSY 108
           +KY+ S IF   + + N+      +P    R Y
Sbjct: 153 DKYMDSGIFSRAREEANVVPEGARVPIEIPRDY 185


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 129 WNLDSRAFQIQLYLCVFKNRTVYILIFL 212
           W L   AF+I   L      T+ I++++
Sbjct: 215 WTLIEHAFEISTMLFFVLPMTIIIVLYI 242


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 52  KLKTHMPLPT*N*KKKCTL*LRTF 123
           KL  HM + T     KCT+  +TF
Sbjct: 162 KLHRHMRIHTGERPHKCTVCSKTF 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,521
Number of Sequences: 438
Number of extensions: 2076
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)