Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0343
         (365 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42280.1 68418.m05146 DC1 domain-containing protein contains ...    28   2.2  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    28   2.2  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    27   2.9  
At4g36780.1 68417.m05218 brassinosteroid signalling positive reg...    27   5.0  
At1g60590.1 68414.m06820 polygalacturonase, putative / pectinase...    26   6.7  
At2g27390.1 68415.m03306 proline-rich family protein contains pr...    26   8.8  

>At5g42280.1 68418.m05146 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 694

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 339 EFHRLCHAFKLEILHDIH 286
           EFHR CH F  EI H  H
Sbjct: 102 EFHRGCHVFPPEIKHIFH 119


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 339 EFHRLCHAFKLEILHDIH 286
           EFHR CH F  EI H  H
Sbjct: 63  EFHRGCHIFLPEIRHPFH 80


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
           MRP-like ABC transporter [Arabidopsis thaliana]
           GI:2316016; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1466

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 259 YFTVNCHFF*INFGVYKKISMYTVRFL 179
           +F V+C+   ++F +YKK  M +V F+
Sbjct: 133 FFVVSCYHLVVDFVLYKKQEMVSVHFV 159


>At4g36780.1 68417.m05218 brassinosteroid signalling positive
           regulator-related contains similarity to BZR1 protein
           [Arabidopsis thaliana] gi|20270971|gb|AAM18490
          Length = 169

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 139 SRFQLQMSEATMYTFFFNFM*ATAYAFLILF 47
           SR  L M+E  ++TFFF     +   FL+ F
Sbjct: 129 SRVHLAMTETLLHTFFFRSYTTSLLRFLLTF 159


>At1g60590.1 68414.m06820 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase PG1 (GI:5669846),
           PG2 (GI:5669848) from [Glycine max]; contains PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 540

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 331 PPLSCLQTRNPSRYSSHTD 275
           PP+ CLQ   P+R   H+D
Sbjct: 517 PPIDCLQIGKPARNGVHSD 535


>At2g27390.1 68415.m03306 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 134

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 352 PSRRRIPPPLSCLQTRNP 299
           P     PPP SCL+T++P
Sbjct: 108 PPPEEPPPPASCLRTKSP 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,881,477
Number of Sequences: 28952
Number of extensions: 149625
Number of successful extensions: 386
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)