Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0342
         (743 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q89379 Cluster: A44L protein; n=1; Paramecium bursaria ...    38   0.34 
UniRef50_A7IVU8 Cluster: Putative uncharacterized protein B073L;...    38   0.34 
UniRef50_A4BIT0 Cluster: Putative uncharacterized protein; n=1; ...    33   5.6  

>UniRef50_Q89379 Cluster: A44L protein; n=1; Paramecium bursaria
           Chlorella virus 1|Rep: A44L protein - Paramecium
           bursaria Chlorella virus 1 (PBCV-1)
          Length = 599

 Score = 37.5 bits (83), Expect = 0.34
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
 Frame = -2

Query: 421 GIVIYEQKYPDILCNDFCIHLTAVNITSL*SVRLSNGI*T--TYGIILYLLYTDVKYLLS 248
           G  +   +Y  I+ +DFCI L  +        +L NG+ T  +Y I  Y    D+ YL++
Sbjct: 111 GQFVIGHRYEIIVDDDFCIRLKTI------VEKLENGVDTIESYIIETYTYTKDLTYLMT 164

Query: 247 TICILF*IYFIFRKHKY*NDL*FFNEHLG--LTENIMTEYSYQVETMQNFMFS 95
            +  +   Y I ++++   D  FF +H+   LT+N+    +Y+   ++N MFS
Sbjct: 165 RLKNIERDYTILKQNEL-GDQTFFFDHMAVPLTKNVDGTLAYE-NALRNMMFS 215


>UniRef50_A7IVU8 Cluster: Putative uncharacterized protein B073L;
           n=2; Chlorovirus|Rep: Putative uncharacterized protein
           B073L - Paramecium bursaria Chlorella virus NY2A
           (PBCV-NY2A)
          Length = 603

 Score = 37.5 bits (83), Expect = 0.34
 Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
 Frame = -2

Query: 421 GIVIYEQKYPDILCNDFCIHLTAVNITSL*SVRLSNGI*T--TYGIILYLLYTDVKYLLS 248
           G  +   +Y  I+ +DFCI L  +        +L NG+ T  +Y I  Y    D+ YL+S
Sbjct: 111 GQFVIGHRYEIIVDDDFCIRLKTI------VEKLENGVDTIESYIIETYTYTKDLTYLMS 164

Query: 247 TICILF*IYFIFRKHKY*NDL*FFNEHLG--LTENIMTEYSYQVETMQNFMFS 95
            +  +   Y I ++++   D  FF +H+   LT+N+    +Y+   ++N MFS
Sbjct: 165 RLKNIERDYTIQKQNEL-GDQTFFFDHMAVPLTKNVDGTLTYE-NALRNMMFS 215


>UniRef50_A4BIT0 Cluster: Putative uncharacterized protein; n=1;
           Reinekea sp. MED297|Rep: Putative uncharacterized
           protein - Reinekea sp. MED297
          Length = 539

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = -2

Query: 472 TTSLPNFIDNWVNHLLMGIVIYEQKYPDILCNDFCIHLTAVNITSL*SVRL 320
           T S+PN  D ++ + L  I + +Q+Y DIL +D C  +  V   S  S+RL
Sbjct: 2   TQSIPND-DYYLTYFLRMIDVVDQRYNDILDDDVCYFIQQVRACSRPSLRL 51


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,908,501
Number of Sequences: 1657284
Number of extensions: 12213778
Number of successful extensions: 26088
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26038
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)