Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0342
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    28   1.6  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    27   2.1  
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    27   2.1  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    27   2.1  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    27   2.8  
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          26   6.5  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   6.5  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    25   8.6  

>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 35  RNSARGLDIVQNQTAT*ENAAEHEV--LHCFHLVRIFCHDIL 154
           R +  G + V NQT    +  ++ V  + C HLV   CHD L
Sbjct: 70  RGNEDGENDVLNQTRETNSNFDNRVGVIECIHLVNFMCHDSL 111


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 88  FLRRRL-ILNYVQTSCRIPAARGSTSFRAP 2
           F R +L  L Y++ +CR   +RG+  FRAP
Sbjct: 48  FFRNKLKYLAYLRKACRYNPSRGAFHFRAP 77


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 88  FLRRRL-ILNYVQTSCRIPAARGSTSFRAP 2
           F R +L  L Y++ +CR   +RG+  FRAP
Sbjct: 48  FFRNKLKYLAYLRKACRYNPSRGAFHFRAP 77


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 88  FLRRRL-ILNYVQTSCRIPAARGSTSFRAP 2
           F R +L  L Y++ +CR   +RG+  FRAP
Sbjct: 48  FFRNKLKYLAYLRKACRYNPSRGAFHFRAP 77


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 397 YPDILCNDFCIHLTAVNITSL*SVRLSNGI*TTYGIILYLLYTDV 263
           Y ++LC+ F   +  + ITS      S GI TT+ ++L+ +  ++
Sbjct: 298 YLNLLCDSFHNFMDGLAITSAFFTNTSIGISTTFAVLLHEIPAEI 342


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 149 YHDRIFLPSGNNAKLHVQLHFLTSPSD 69
           Y  ++ LP G + KLHV L  L  P D
Sbjct: 128 YETQLGLPVGLHPKLHVHLKNLHKPED 154


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +1

Query: 535 HLTSVLFTGYLCYLCIS----LSNEYKNIDFNLVILIIIFYVNAL 657
           H    +FT + CY CIS    +S +Y    F+      I+Y+ A+
Sbjct: 533 HRFPCIFTSFSCYNCISGTRNISRQYSRDKFHYNQRTTIYYLVAI 577


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 438 TQLSMKFGREVVLITIKVKMIIKHSFNLQCTRTFD 542
           T++S K  R  +L T   K ++++SF    TRTFD
Sbjct: 530 TRIS-KVCRNGLLSTDLCKQLVEYSFTTAVTRTFD 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,463
Number of Sequences: 5004
Number of extensions: 56576
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)