Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0342
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0639 + 5383967-5385951,5386973-5387066,5387410-5387841,538...    30   1.7  
09_02_0611 + 11235977-11236180,11236453-11236495,11237171-112372...    28   9.0  
02_05_0892 - 32556432-32556545,32557132-32557175,32557262-325573...    28   9.0  

>12_01_0639 + 5383967-5385951,5386973-5387066,5387410-5387841,
            5387935-5388219,5388324-5388641,5388756-5388983,
            5389264-5389364,5389447-5389552,5389782-5390132,
            5390262-5390401,5390687-5390861,5390937-5390954
          Length = 1410

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 386  FMQRLLHSLDSCQYNITVKRAVKQRNL 306
            F+Q+LLH LD C  N  + R +K  NL
Sbjct: 936  FVQQLLHGLDHCHKNGVLHRDIKGSNL 962


>09_02_0611 +
           11235977-11236180,11236453-11236495,11237171-11237241,
           11237637-11237865,11238277-11238611
          Length = 293

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 382 IKCQDIFARKLQFPLISD*PNYQ*SLEGKW 471
           ++ Q I  RKL+F  I+D P  Q S +G+W
Sbjct: 168 VETQPIERRKLEFWPINDTPGLQISKDGRW 197


>02_05_0892 -
           32556432-32556545,32557132-32557175,32557262-32557319,
           32560129-32560222,32560335-32560579
          Length = 184

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 436 NHLLMGIVIYEQKYPDILCNDF 371
           N+LL G +    +YP +LC DF
Sbjct: 163 NYLLTGWIALNTRYPSLLCPDF 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,546,631
Number of Sequences: 37544
Number of extensions: 297708
Number of successful extensions: 497
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)