Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0342
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.24 
SB_33698| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_34552| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_55243| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_37784| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)                  28   7.0  

>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 48 RAEFLQPGDPLVLER 4
          R EFLQPGDPLVLER
Sbjct: 31 RIEFLQPGDPLVLER 45


>SB_33698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3

Query: 63 TMSKPRAEFLQPGDPLVLER 4
          T S+PR+    PGDPLVLER
Sbjct: 17 TNSRPRSNSCSPGDPLVLER 36


>SB_34552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 63 TMSKPRAEFLQPGDPLVLER 4
          T  KP++    PGDPLVLER
Sbjct: 26 TRRKPQSNSCSPGDPLVLER 45


>SB_55243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 57 SKPRAEFLQPGDPLVLER 4
          ++PR+    PGDPLVLER
Sbjct: 14 ARPRSNSCSPGDPLVLER 31


>SB_37784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 152 EYHDRIFLPSGNNAKLHVQLHFLT-SPSDFELCPNLVPNS 36
           +YH   +L SG+    HV  HF++ S  D+ +  +L+  S
Sbjct: 209 DYHVITYLISGSTQDYHVSAHFISGSTQDYHVITHLISGS 248


>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
          Length = 1552

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
 Frame = -2

Query: 529 VHCKLKECLIIIFTLIVISTTSLPNFIDNWVNHLLMGIVIYEQKY-P--DILCN 377
           VH ++K+  III  L +     LP++ + W +   +G+V++ Q++ P   I+CN
Sbjct: 795 VHDQIKDFKIIITLLPIQIMRQLPSYNNEWYD---IGVVVFHQEHIPLIAIMCN 845


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,424,725
Number of Sequences: 59808
Number of extensions: 388613
Number of successful extensions: 2483
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2477
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)