Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0342
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82088-3|CAF32230.1|  978|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z81490-5|CAF32231.1|  978|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF078788-3|AAC26966.1|  547|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z99286-1|CAH60792.1|  311|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z82088-3|CAF32230.1|  978|Caenorhabditis elegans Hypothetical
           protein ZK256.1c protein.
          Length = 978

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 35  RNSARGLDIVQNQTAT*ENAAEHEVLHCFHLVR 133
           R+ +   D +  +T T E AA HEV+ C H +R
Sbjct: 68  RSKSISKDDIMIETLTSEQAASHEVVPCTHQLR 100


>Z81490-5|CAF32231.1|  978|Caenorhabditis elegans Hypothetical
           protein ZK256.1c protein.
          Length = 978

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 35  RNSARGLDIVQNQTAT*ENAAEHEVLHCFHLVR 133
           R+ +   D +  +T T E AA HEV+ C H +R
Sbjct: 68  RSKSISKDDIMIETLTSEQAASHEVVPCTHQLR 100


>U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical
           protein F45F2.6 protein.
          Length = 581

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 288 YYIYCTQM*NIYYLLFVYYFRFILY 214
           Y I+C  M +I  L F+Y + +ILY
Sbjct: 81  YTIFCVLMYSIAILYFIYLYAYILY 105


>AF078788-3|AAC26966.1|  547|Caenorhabditis elegans Hypothetical
           protein ZC190.6 protein.
          Length = 547

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/82 (28%), Positives = 39/82 (47%)
 Frame = -2

Query: 286 LYLLYTDVKYLLSTICILF*IYFIFRKHKY*NDL*FFNEHLGLTENIMTEYSYQVETMQN 107
           L +L++   YLL     L    F+F K  Y +   +F    G+T   + E+ Y ++++  
Sbjct: 42  LLILFSVSIYLLDISHGLTVFEFLFEKQTYYHI--YFVSVRGITWRFLHEFGYSLQSLSL 99

Query: 106 FMFSCIFLRRRLILNYVQTSCR 41
           F+FS      RLI +   T+ R
Sbjct: 100 FLFSI----ERLIASLCPTAYR 117


>Z99286-1|CAH60792.1|  311|Caenorhabditis elegans Hypothetical
           protein Y7A9C.7 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 7/34 (20%), Positives = 21/34 (61%)
 Frame = +1

Query: 541 TSVLFTGYLCYLCISLSNEYKNIDFNLVILIIIF 642
           T  ++  ++C+ C++ ++++K   FNL    +++
Sbjct: 72  TYFIYLSFICFFCLTFTHKHKGQYFNLAFPFLLY 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,808,690
Number of Sequences: 27780
Number of extensions: 318439
Number of successful extensions: 744
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)