Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0342
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.0  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   7.0  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   7.0  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   7.0  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 83  TSPSDFELCPNLVPNSCS 30
           T P++   C N  PN C+
Sbjct: 419 TGPNEIVTCTNCGPNPCT 436


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 83  TSPSDFELCPNLVPNSCS 30
           T P++   C N  PN C+
Sbjct: 405 TGPNEIVTCTNCGPNPCT 422


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 83  TSPSDFELCPNLVPNSCS 30
           T P++   C N  PN C+
Sbjct: 439 TGPNEIVTCTNCGPNPCT 456


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 83  TSPSDFELCPNLVPNSCS 30
           T P++   C N  PN C+
Sbjct: 388 TGPNEIVTCTNCGPNPCT 405


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 475 STTSLPNFIDNWVNHLLMGIVIYEQK 398
           +T   PNF+D W   L   I  + +K
Sbjct: 73  NTLLRPNFLDGWYQTLQSAISAHMKK 98


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 475 STTSLPNFIDNWVNHLLMGIVIYEQK 398
           +T   PNF+D W   L   I  + +K
Sbjct: 73  NTLLRPNFLDGWYQTLQSAISAHMKK 98


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 475 STTSLPNFIDNWVNHLLMGIVIYEQK 398
           +T   PNF+D W   L   I  + +K
Sbjct: 73  NTLLRPNFLDGWYQTLQSAISAHMKK 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,108
Number of Sequences: 438
Number of extensions: 4215
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)