Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0339
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    29   0.59 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   4.1  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    25   5.5  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   7.2  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   7.2  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   7.2  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPBC216.06c |swi1||replication fork protection complex subunit S...    25   7.2  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   9.5  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   9.5  

>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +1

Query: 394 NVCIKILHEKITVDSLKKYP----SLVEVYSSLVEKVKEYDVDVNPSTVLP 534
           N+ + +LHE IT+D + K P    SL+++  +  ++   + +   PS + P
Sbjct: 76  NMDLGLLHENITLDRIPKVPENHVSLIDIDEARAKEDPNFQIHSTPSRMPP 126


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 102 YSFRKFW*QALMNLID*VCVFIHIY 28
           + FR+FW   L +L+  V +F HIY
Sbjct: 41  FHFRRFWTIWLKSLVIMVLLFTHIY 65


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 304 KPLDKSFEILYGFPLDQILYINIFDKKDIFNVCIKILHEKITVDSLKKYPSLVEVYSSLV 483
           K  D+ FE+    P   + Y N+ ++   F    KI    +   +L  YP   E+++  +
Sbjct: 501 KLYDRVFELKIATPQVVVNYANLLEENAYFEDSFKIYERGV---ALFSYPVAFELWNLYL 557

Query: 484 EK-VKEY 501
            K VK Y
Sbjct: 558 TKFVKRY 564


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 430 VDSLKKYPSLVEVYSSLVEKVKEYDVDVNPSTVL 531
           V + K + SL+  Y+SL+E  KE +   N ++ L
Sbjct: 371 VSANKSFLSLINRYASLIEGKKELEASSNDASRL 404


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +1

Query: 442 KKYPSLVEVYSSLVEKVKE----YDVDVNPSTVLP 534
           +KYP   E+Y +L  ++K+    +D  V P T+ P
Sbjct: 248 RKYPEKEEIYPTLSPRIKKPRKVFDAVVIPVTIKP 282


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 448 TSLDCLQLFFHVEF 407
           TSL CLQLF H+ F
Sbjct: 58  TSLRCLQLFVHLTF 71


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 205  CPVSSTILSNIIILYEEIKSTGNWNTEECKE 297
            C V ST+L+  + +YE  ++  N  T+  K+
Sbjct: 933  CAVKSTVLNTTLRIYEADRALKNKKTQSLKK 963


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 361 YINIFDKKDIFNV-CIKILHEKITVDSL 441
           ++ I + + IFN+ CI+ LHE + +D L
Sbjct: 291 FLRINNGESIFNLLCIEDLHESVNLDIL 318


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 413 RIL-MHTLKISFLSKIFMYKI*SNGKPYKISKDLSKGFMYSLHSSVFQLPVLFI 255
           R+L +H +++ ++   F+  +  + KP K  +  S  + + L +SVF    L +
Sbjct: 362 RVLPIHKMQLLYVQSFFLEFMRFSSKPKKTEEIYSNDYSFGLAASVFDQRALIM 415


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 364 INIFDKKDIFNVCIKILHEKITVD--SLKKYPS 456
           +N FD  D     +KILH   T+D  +++ YPS
Sbjct: 153 LNEFDADDKIQRQMKILHSVDTIDPSTVQNYPS 185


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 244 LYEEIK---STGNWNTEECKEYIKPLDKSFEILYGF 342
           L +EIK     G W+ E+  ++++ L+K  + +Y F
Sbjct: 25  LKKEIKRRNDQGGWSEEDESDFVELLEKELDKVYSF 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.138    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,337
Number of Sequences: 5004
Number of extensions: 37521
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)