Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0339
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694... 28 4.2
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 28 5.5
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 28 5.5
03_02_0943 + 12598616-12598789,12599790-12601250 28 5.5
02_01_0447 - 3220489-3220560,3221287-3221420,3221500-3221731,322... 28 5.5
08_02_1333 + 26215545-26215759,26217315-26217372,26218263-262183... 27 7.3
06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697... 27 9.7
>03_05_0882 +
28467691-28467730,28468386-28468675,28469262-28469411,
28470126-28470214,28470331-28470440,28470545-28470639,
28471110-28471162,28471374-28471539,28471909-28472001,
28472304-28472432,28472549-28472668,28472862-28472942,
28473495-28473602,28473895-28474038,28474120-28474218,
28474300-28474379,28474830-28474922,28475197-28475320
Length = 687
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 415 HEKITVDSLKKYPSLVEVYSSLVE-KVKE-YDVDVNP 519
HEKI KKY VE SS VE K K+ Y+ D+NP
Sbjct: 546 HEKIVSRGPKKYAEDVESGSSDVETKYKKMYEDDINP 582
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Frame = +1
Query: 295 EYIKPLDKSFEILYGFPLDQILYINIFDKK-DIFNVCIKILH-----EKITVDSLKKYPS 456
+Y + K ++ +D+ + I +KK +I+N +K+ EK+ + +
Sbjct: 620 KYDERCKKVGDVASKLSMDEATFREIQEKKLEIYNAIVKLQKGDGNDEKLQERANQIQSD 679
Query: 457 LVEVYSSLVEKVKEYDVDVNPSTVLPL 537
L E+ SL E+ K Y + P+T++ L
Sbjct: 680 LEELVKSLNEQCKRYGLRAKPTTLVEL 706
>04_04_0076 +
22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 27.9 bits (59), Expect = 5.5
Identities = 20/77 (25%), Positives = 35/77 (45%)
Frame = +1
Query: 277 NTEECKEYIKPLDKSFEILYGFPLDQILYINIFDKKDIFNVCIKILHEKITVDSLKKYPS 456
+TE + I D+ E L ++Q+ +I D+K+ + C + + L+ S
Sbjct: 470 DTESLQGEIAKRDQQVETLEN-QVNQLC--SIIDEKEQLHTCAVEREKNLEEQKLQVQAS 526
Query: 457 LVEVYSSLVEKVKEYDV 507
L S L E K+YD+
Sbjct: 527 LAATESQLTEAKKQYDI 543
>03_02_0943 + 12598616-12598789,12599790-12601250
Length = 544
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +1
Query: 409 ILHEKITVDSLKKYPSLVEVYSSLVEKVKEYDVDVNPSTV 528
I+ EK T+D LK+ S ++ + L +++++ + +PS V
Sbjct: 82 IIKEKETLDVLKELESTKKIIADLKQRIQKESNETSPSAV 121
>02_01_0447 -
3220489-3220560,3221287-3221420,3221500-3221731,
3221817-3222015,3222101-3222181,3222260-3222315,
3222493-3222623,3222700-3222847,3224151-3224321,
3224417-3224775,3224898-3225189
Length = 624
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 400 CIKILHEKITVDSLKKYPSLVEVYSSLVEKVKEYDVDVNPSTVL 531
CI ++ K+ V +L P L E+Y + D+D+ P +L
Sbjct: 571 CITDINTKVIVSALSYNPELNEIYIGTAKGKALADLDILPHQIL 614
>08_02_1333 +
26215545-26215759,26217315-26217372,26218263-26218342,
26218606-26218639,26218756-26218896
Length = 175
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 350 SNGKPYKISKDLSKGFMYSLHSSVFQLPVLFISSYNIMILLNIVEL 213
+N Y +K + +YSLH +F P LF+ Y +N+ ++
Sbjct: 78 ANMHKYVDNKGKANVAIYSLHIVLFLKPSLFVQPYFFRFTINLTKI 123
>06_03_0287 -
19168685-19168735,19168847-19168884,19169517-19169727,
19171461-19171643,19171879-19172028,19172161-19172256,
19172378-19172464,19172535-19172741,19172823-19173047,
19173150-19173261,19173397-19173453,19175522-19176882
Length = 925
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 301 IKPLDKSFEILYGFPLDQI 357
+ PLDK F ILYG D I
Sbjct: 690 VAPLDKQFSILYGLLTDHI 708
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.138 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,853,225
Number of Sequences: 37544
Number of extensions: 172998
Number of successful extensions: 369
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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