Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0339
         (542 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_5300| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.3  
SB_42147| Best HMM Match : Thioredoxin (HMM E-Value=0.3)               28   4.3  
SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_4149| Best HMM Match : VWA (HMM E-Value=0)                          28   5.7  
SB_41509| Best HMM Match : Exo_endo_phos (HMM E-Value=4.7e-05)         27   7.5  
SB_17468| Best HMM Match : Ycf9 (HMM E-Value=2.7)                      27   7.5  
SB_3559| Best HMM Match : Peptidase_M10_N (HMM E-Value=1.3)            27   7.5  
SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_41211| Best HMM Match : PBP_GOBP (HMM E-Value=0.82)                 27   9.9  

>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +1

Query: 334 YGFPLDQILYINIFDKKDIFNVCIKILHEKITVDSLKKYPSLVEVYSSLVEKVKE 498
           Y F +  ++ ++I D+K +F  C+ +L     +  ++ Y  L ++  S+ E +KE
Sbjct: 135 YDFLVSWLVILHIEDRKTLFKKCLDLLKPGGKI-YIEDYYKLADISPSIAEDLKE 188


>SB_5300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 1   LQESARGFLVNMDKNTNL--INQIHKCLLPKLSKGIDETE 114
           LQE+A  +LV + ++TNL  I+     L  K S  +DE+E
Sbjct: 90  LQEAAEAYLVGLFEDTNLCAIHAKRVTLCQKTSSSLDESE 129


>SB_42147| Best HMM Match : Thioredoxin (HMM E-Value=0.3)
          Length = 787

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 412 LHEKITVDSLKKYPSLVEVYSSLVEKV 492
           +H +I  D+ +KY  L+E Y +++EK+
Sbjct: 23  VHRQIFRDTCQKYTKLLEWYKTIIEKI 49


>SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 316 KSFEILY--GFPLDQILYINIFDKKDIFNVCIKILHEKITVDSLKKYPSLVEVYSSLV 483
           + FE+++  G  L   L  +++  K+    C K+LHE +      + PS   VYS LV
Sbjct: 768 EGFEVIFENGEKLVYKLKKSLYGLKESGRNCNKLLHESLMESGFNRNPSDHCVYSKLV 825


>SB_4149| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1141

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 286 ECKEYIKPLDKSFEILYGFPLDQILYINIFDKKDIFNVCIKIL 414
           E  + ++P  K  ++L+G P+   L   I+  K  FN  + +L
Sbjct: 455 EGADKVRPCGKPIDVLFGIPVSNHLGQEIWSAKSTFNSILGLL 497


>SB_41509| Best HMM Match : Exo_endo_phos (HMM E-Value=4.7e-05)
          Length = 670

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 433 DSLKKYPSLVEVYSSLVEKVKEYDVDVNPSTVLPL 537
           DSLK   SL+++Y+SL    ++  V+ +P    PL
Sbjct: 111 DSLKLVVSLLDLYTSLKSDKEKASVEPSPMAAAPL 145


>SB_17468| Best HMM Match : Ycf9 (HMM E-Value=2.7)
          Length = 426

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 256 IKSTGNWNTEECKEYIKPLDKSFEILYGFPLDQILYINI 372
           IK   +W T+EC +   PL++SFE L  +    + ++N+
Sbjct: 76  IKDVSSW-TDECTDPYLPLERSFEQLKYYNKFLLRFMNL 113


>SB_3559| Best HMM Match : Peptidase_M10_N (HMM E-Value=1.3)
          Length = 861

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 256 IKSTGNWNTEECKEYIKPLDKSFEILYGFPLDQILYINI 372
           IK   +W T+EC +   PL++SFE L  +    + ++N+
Sbjct: 742 IKDVSSW-TDECTDPYLPLERSFEQLKYYNKFLLRFMNL 779


>SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 388 YLSYQKYLCTRFDLMGNHIKFQKIYLKALCTPC 290
           Y  Y+  +CTR       +   K+Y + +CT C
Sbjct: 267 YKVYESCVCTRCTRGVREVHVYKVYARCVCTRC 299


>SB_41211| Best HMM Match : PBP_GOBP (HMM E-Value=0.82)
          Length = 301

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 211 VSSTILSNIIILYEE-IKSTGNWNT--EECKEYIKPLDKSFEILY 336
           V  T LS I+++ +E I+   + NT  E+ K Y  P+DK F+  Y
Sbjct: 87  VLQTRLSKILLVKKECIEKLRDMNTKAEKMKSYQDPIDKDFQRQY 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.138    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,411,183
Number of Sequences: 59808
Number of extensions: 232534
Number of successful extensions: 540
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)