Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0339
         (542 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC056415-1|AAH56415.1|  631|Homo sapiens RPAP3 protein protein.        30   6.0  
AK025561-1|BAB15170.1|  665|Homo sapiens protein ( Homo sapiens ...    30   6.0  

>BC056415-1|AAH56415.1|  631|Homo sapiens RPAP3 protein protein.
          Length = 631

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
 Frame = +1

Query: 277 NTEECKEYIKPLDKSFEILYGF--PLDQILYINIFDKK---DIFNVCIKILHEKITVDSL 441
           N+ + +   + L  S ++LY +   ++  LY  +F K    D+FN  +KILH+   ++  
Sbjct: 514 NSFQLESDFRQLKSSPDMLYQYLKQIEPSLYPKLFQKNLDPDVFNQIVKILHD-FYIE-- 570

Query: 442 KKYPSLVEVYSSLVEKVKEYDVDV 513
           K+ P L+      + ++K +D+ V
Sbjct: 571 KEKPLLIFEILQRLSELKRFDMAV 594


>AK025561-1|BAB15170.1|  665|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21908 fis, clone HEP03830. ).
          Length = 665

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
 Frame = +1

Query: 277 NTEECKEYIKPLDKSFEILYGF--PLDQILYINIFDKK---DIFNVCIKILHEKITVDSL 441
           N+ + +   + L  S ++LY +   ++  LY  +F K    D+FN  +KILH+   ++  
Sbjct: 548 NSFQLESDFRQLKSSPDMLYQYLKQIEPSLYPKLFQKNLDPDVFNQIVKILHD-FYIE-- 604

Query: 442 KKYPSLVEVYSSLVEKVKEYDVDV 513
           K+ P L+      + ++K +D+ V
Sbjct: 605 KEKPLLIFEILQRLSELKRFDMAV 628


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.317    0.138    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,559,411
Number of Sequences: 237096
Number of extensions: 1009535
Number of successful extensions: 5907
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5907
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5308067764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)