Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0339
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   3.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.1  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 457 LVEVYSSLVEKVKEYDVDVN 516
           L E YSSL   +K Y+V  N
Sbjct: 297 LTEAYSSLENTLKYYEVGSN 316


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 334 YGFPLDQILYINIFDKKDIFNVCIKILHE 420
           +GFPLD+ LY   ++  ++    I I H+
Sbjct: 647 FGFPLDKPLYDFNYEGPNMLFKDILIYHK 675


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 334 YGFPLDQILYINIFDKKDIFNVCIKILHE 420
           +GFPLD+ LY   ++  ++    I I H+
Sbjct: 647 FGFPLDKPLYDFNYEGPNMLFKDILIYHK 675


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 46  CFYPYLPET 20
           C+YPY P T
Sbjct: 388 CYYPYHPST 396


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 46  CFYPYLPET 20
           C+YPY P T
Sbjct: 388 CYYPYHPST 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.138    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,831
Number of Sequences: 438
Number of extensions: 2514
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)