Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0339
(542 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 29 2.0
At1g01140.3 68414.m00020 CBL-interacting protein kinase 9 (CIPK9... 29 2.0
At1g01140.2 68414.m00019 CBL-interacting protein kinase 9 (CIPK9... 29 2.0
At1g01140.1 68414.m00018 CBL-interacting protein kinase 9 (CIPK9... 29 2.0
At5g27320.1 68418.m03262 expressed protein similar to PrMC3 [Pin... 28 4.6
At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p... 27 8.1
At5g07070.1 68418.m00800 CBL-interacting protein kinase 2 (CIPK2... 27 8.1
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Frame = +1
Query: 226 LSNIIILYEEIKSTGNWNTEECKEYIKPLDKSFEILYGFPLDQILYINIFDKKDIFNVCI 405
L+ + I E+IK T CK+ ++ + F+ G L +L K+D +C
Sbjct: 629 LAGLKISLEDIKDTDRIMYNSCKQILEMDPEFFDSNAGLGLTFVLETEELGKRDTIELCP 688
Query: 406 KILHEKITVDSLKKYPSLV---EVYSSLVEKVKEY 501
+ + + K+Y L+ + ++E+VK++
Sbjct: 689 DGKLKAVNSKNRKQYVDLLIERRFATPILEQVKQF 723
>At1g01140.3 68414.m00020 CBL-interacting protein kinase 9 (CIPK9)
identical to CBL-interacting protein kinase 9
[Arabidopsis thaliana] gi|13249117|gb|AAK16684; contains
Pfam profiles PF00069: Protein kinase domain and
PF03822: NAF domain; identical to cDNA CBL-interacting
protein kinase 9 (CIPK9) GI:13249116
Length = 451
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 364 INIFDKKDIF-NVCIKILHEKITVDSLKKYPSLVEVYSSLVEKVKEYDV 507
I I D++ +F + ++ L +I+ L K+P++VE+ + K K Y V
Sbjct: 47 IKILDREKVFRHKMVEQLKREISTMKLIKHPNVVEIIEVMASKTKIYIV 95
>At1g01140.2 68414.m00019 CBL-interacting protein kinase 9 (CIPK9)
identical to CBL-interacting protein kinase 9
[Arabidopsis thaliana] gi|13249117|gb|AAK16684; contains
Pfam profiles PF00069: Protein kinase domain and
PF03822: NAF domain; identical to cDNA CBL-interacting
protein kinase 9 (CIPK9) GI:13249116
Length = 449
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 364 INIFDKKDIF-NVCIKILHEKITVDSLKKYPSLVEVYSSLVEKVKEYDV 507
I I D++ +F + ++ L +I+ L K+P++VE+ + K K Y V
Sbjct: 47 IKILDREKVFRHKMVEQLKREISTMKLIKHPNVVEIIEVMASKTKIYIV 95
>At1g01140.1 68414.m00018 CBL-interacting protein kinase 9 (CIPK9)
identical to CBL-interacting protein kinase 9
[Arabidopsis thaliana] gi|13249117|gb|AAK16684; contains
Pfam profiles PF00069: Protein kinase domain and
PF03822: NAF domain; identical to cDNA CBL-interacting
protein kinase 9 (CIPK9) GI:13249116
Length = 447
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 364 INIFDKKDIF-NVCIKILHEKITVDSLKKYPSLVEVYSSLVEKVKEYDV 507
I I D++ +F + ++ L +I+ L K+P++VE+ + K K Y V
Sbjct: 47 IKILDREKVFRHKMVEQLKREISTMKLIKHPNVVEIIEVMASKTKIYIV 95
>At5g27320.1 68418.m03262 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 344
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 22 FLVNMDKNTNLINQIHKCLLPKLSKGIDETENPIEYEI 135
F V +D+ TNL++++++ S I + +NP++ EI
Sbjct: 66 FDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEI 103
>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
protein contains Pfam profile: PF03130 PBS lyase
HEAT-like repeat
Length = 1116
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 28 VNMDKNTNLINQIHKCLLPKLSKGIDETENP 120
++ D +L NQ H+ +LP L+ +D+ +NP
Sbjct: 446 LSTDLGPDLQNQHHERVLPALAAAMDDFQNP 476
>At5g07070.1 68418.m00800 CBL-interacting protein kinase 2 (CIPK2)
identical to CBL-interacting protein kinase 2
[Arabidopsis thaliana] gi|9280636|gb|AAF86506
Length = 456
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 364 INIFDKKDIFNVCI-KILHEKITVDSLKKYPSLVEVYSSLVEKVKEYDV 507
I + DK + V + + + +I+V + K+P++VE+Y + K + Y V
Sbjct: 40 IKMIDKDKVMRVGLSQQIKREISVMRIAKHPNVVELYEVMATKSRIYFV 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.138 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,658,577
Number of Sequences: 28952
Number of extensions: 167698
Number of successful extensions: 412
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -