Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0338
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   2.2  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    21   6.6  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    21   6.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   6.6  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   8.7  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 133 DFL*TFKASQNALVFSVHG 77
           DFL TF + QN    S+HG
Sbjct: 423 DFLATFLSEQNIQSTSIHG 441


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 80  RSHCFSTSMFKG 45
           R +CF+T  FKG
Sbjct: 86  RKNCFTTDYFKG 97


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 80  RSHCFSTSMFKG 45
           R +CF+T  FKG
Sbjct: 86  RKNCFTTDYFKG 97


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 403 YPIPNPSCATGPNPP 359
           YP P P  +T PN P
Sbjct: 323 YPSPVPGHSTSPNLP 337


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 80  RSHCFSTSMFKG 45
           RS CFST  F G
Sbjct: 86  RSECFSTKYFVG 97


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,388
Number of Sequences: 336
Number of extensions: 3458
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)