Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0338
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 30 0.25
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 28 1.0
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 28 1.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.8
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|... 27 2.3
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 27 3.1
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 27 3.1
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 26 4.1
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 7.1
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 7.1
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 25 9.4
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 25 9.4
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 25 9.4
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 30.3 bits (65), Expect = 0.25
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -3
Query: 436 TAAPSLSGKAEYP-IPNPSCATGPNPPAITLGADKV-LVLRIDLFRNLYSYES 284
++ PS +G+ P +P+P +T PN PA+ D V L + +N YS S
Sbjct: 611 SSTPSYNGERIVPDVPSPCISTNPNLPALVGSLDSVNLHHLLGFIQNTYSTTS 663
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +3
Query: 27 ESCSTSAFKHGRTETMRPCTEKTKAFCEALNVHKKSKDELRVAMGECSAYHSELVKQ 197
E S +A + + + PCT + + + SKD+ +CS Y SE +Q
Sbjct: 386 EGFSEAAENNDKPKETMPCTYDSSLADDHSDTSNLSKDKANTLCAQCSVYLSEKYQQ 442
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/85 (22%), Positives = 32/85 (37%)
Frame = +3
Query: 219 DRHLFALMKIAEENDIPRPELFDSYEYKFLNKSILSTSTLSAPSVMAGGFGPVAQEGFGI 398
D F + ++ +P P F + K + +S + +G P A GFG
Sbjct: 405 DSSFFRSLMTSDTRSVPPPPGFSTNAPKAVKSPEISAPPGLYRGLSSGASIPSAPPGFGY 464
Query: 399 GYSAFPDKLGAAVSSYKTHNSSTEF 473
+FP G S+Y + + F
Sbjct: 465 QQPSFPYSPGFPPSAYNQNRTGYGF 489
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 427 PSLSGKAEYPIPNPSCATGPNPP 359
PSLS A PIP PS T +PP
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPP 268
>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 237 LMKIAEENDIPRPELFDSY 293
L K A+ENDIP ++ D+Y
Sbjct: 56 LKKFAKENDIPESQVLDAY 74
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = -2
Query: 485 KSLHKFGTTIVRFITAHSCT*FIRKSRVPNTESLLCNWSKSTCHYTGSRQSTC 327
KSL T V + SC +SR N+ S +C S Y R+ C
Sbjct: 200 KSLSCLDNTGVSLNCSSSCKTTPLQSREKNSSSFVCTRSSGLTFYDSKREKIC 252
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 647 SVSFSVLLIIYFFKLTITEHRFF 579
S S +V +I+ FF L T H+FF
Sbjct: 567 SFSLAVYVIVDFFSLWTTRHKFF 589
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +3
Query: 114 LNVHKKSKDELRVAMGECSA---YHSELVKQAAMGQGFDRHLFALMKIAEENDIPRPELF 284
L + KKS +EL+ +G+C A H +++ G+ D+ + N+ R L
Sbjct: 1000 LMIDKKSFEELKEKVGKCVALLLLHFDVMGTKHAGRSMDQQAGDIPARLVRNNSDRSRLS 1059
Query: 285 DSYEYKFLNKSIL 323
D+ F+ + ++
Sbjct: 1060 DNELASFVKEEVM 1072
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Frame = +2
Query: 344 SQCNGRWIWTSCTGGIRY----WVLGFS 415
++ +GRW ++C GG+R+ W+ G+S
Sbjct: 146 NRMSGRWDSSTCGGGLRWQAFAWLNGYS 173
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 338 VGSQCNGRWIWTSCTGGIRYWVLGFS 415
V ++ RW +SC GG+R+ + F+
Sbjct: 206 VFNEIMSRWDTSSCGGGVRWQIYSFN 231
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 436 TAAPSLSGKAEYPIPNPSCATGPNPPAITLGADKVL-VLRIDLFRNLYS 293
T PS S YP+P+ N PAIT+ +L +LR ++ +++ S
Sbjct: 540 TPKPSDSNSL-YPLPHSKVGRRKNIPAITVPPPSILSILRKNIGKDISS 587
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 309 NKSILSTSTLSAPSVMAGGFGPVAQEGFGIGYSAFPDKLGAAVSSYKT-HNSSTEFV 476
NKSI S + P+ A FG + +EG + S + G + H+ S+E V
Sbjct: 635 NKSISSGEGIDMPTAEALAFGTLLEEGHHVRVSGQDVERGTFSQRHAVLHDQSSENV 691
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 243 KIAEENDIPRPELFDSYEYKFLNKSILSTSTLSAPSVMAGGFGPVAQEGFG 395
K+ D L D +++KF ++ I S S + S + GP + FG
Sbjct: 58 KVEVVQDFCSRSLTDEFKFKFTSQPIDSKSESDSASYIRNYLGPEGIKQFG 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,138
Number of Sequences: 5004
Number of extensions: 55818
Number of successful extensions: 145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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