Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0338
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 31 0.60
05_03_0266 + 11303932-11304072,11304150-11304185,11304640-113049... 29 3.2
04_04_0663 + 27058470-27059033,27059355-27059972 29 3.2
06_01_0895 + 6877386-6878475,6878577-6878838,6878932-6879017,687... 29 4.2
03_05_0100 - 20779387-20779641,20779824-20780629,20780757-207810... 28 5.6
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 28 5.6
04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,644... 28 7.4
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 27 9.7
01_06_0329 + 28515740-28516526,28516597-28516631 27 9.7
01_06_0326 - 28495621-28495655,28495726-28496512 27 9.7
01_03_0114 - 12649104-12649141,12650137-12650245,12650500-126506... 27 9.7
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 31.5 bits (68), Expect = 0.60
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = -1
Query: 564 NNLKLAND*SDLTIQT-KSL*FLKTMYEELAQIRYYYCAFYNCSQLHLVYQEKPSTQYRI 388
N L N S T+QT ++L ++T ++L Q ++Y +Q H + P TQ I
Sbjct: 357 NRLSTQNPQSTQTLQTTQNLPSIQT--QQLTQPQFY-------NQTHFPQNQIPQTQANI 407
Query: 387 PPVQLVQIHLPLHWEPTKY 331
P +Q+ I +P TKY
Sbjct: 408 PQMQIPHIQIPQLSNITKY 426
>05_03_0266 +
11303932-11304072,11304150-11304185,11304640-11304903,
11305157-11305524,11305603-11305773,11305853-11306141,
11306373-11306393
Length = 429
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 456 CAFYNCSQLHLVYQEKPST 400
CAF+ C +HL+Y+EK T
Sbjct: 400 CAFHVCHNMHLLYREKVKT 418
>04_04_0663 + 27058470-27059033,27059355-27059972
Length = 393
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -1
Query: 450 FYNCSQLHLVYQEKPSTQYRIPPVQLVQIHLPLH---WEPTKYL 328
FYN Q H + P TQ IP +Q+ I +P + +P +YL
Sbjct: 158 FYN--QTHFPQNQIPQTQTNIPQMQIPHIQIPQYKGDTDPNEYL 199
>06_01_0895 +
6877386-6878475,6878577-6878838,6878932-6879017,
6879117-6879274,6879554-6879630,6879719-6879785
Length = 579
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 433 AAPSLSGK--AEYPIPNPSCATGPNPPAITLGADK 335
AAP+ +G +YP PNP+ A P P G K
Sbjct: 282 AAPNKAGSKYGQYPAPNPAMAAPPKPKKAANGQAK 316
>03_05_0100 -
20779387-20779641,20779824-20780629,20780757-20781011,
20781107-20781221,20781301-20781353,20781517-20781777,
20782804-20782854,20783081-20783329,20784765-20784990,
20785968-20786132
Length = 811
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 405 SAFPDKLGAAVSSYKTHNSSTEFVQALHT---SFLEITRILSG*LNHFSHLRVLN 560
+++ + + +SY+ H+ + + + T SF E T+ LSG HF +V N
Sbjct: 676 TSYASSIAESFASYEKHSGHAVYAEEMLTPAESFSEHTKQLSGRSKHFKQFQVEN 730
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +3
Query: 345 PSVMAGGFGPVAQEGF--GIGYSAFPDKLGAA 434
PS AGG+GP GF GYS P G A
Sbjct: 442 PSYGAGGYGPQGGSGFSESYGYSGSPSHRGNA 473
>04_01_0490 -
6440176-6440448,6440785-6441074,6441156-6441304,
6441432-6441890,6441973-6442269,6442604-6443502,
6443793-6443827,6443984-6444078,6444184-6444247,
6446099-6446175,6446330-6446514
Length = 940
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -1
Query: 501 LKTMYEELAQ--IRYYYCAFYNCSQLHLVYQEKPSTQYRIPPVQLVQIHLPLH--WEPTK 334
LKT+ E L Q + + YNCS L +EK + R +QL + L H W+ K
Sbjct: 150 LKTV-EHLVQGMLFVFLLIIYNCSGQFLTIREKRKARSRENAIQLARQQLKAHEGWKAAK 208
Query: 333 YL 328
L
Sbjct: 209 RL 210
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 256 SSAIFIRANKCLSKPWPMAACFTNSE**AEHSPIATRSSSFDFL*TFKAS 107
+ A +RA C ++ WP +A NS +ATRS +FD + +AS
Sbjct: 44 AGAAAVRAKVCDAR-WPASAAAANSAPYGFRGGVATRSVAFDEMTPRRAS 92
>01_06_0329 + 28515740-28516526,28516597-28516631
Length = 273
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 360 GGFGPVAQEGFGIGYSAFPDKLG 428
G FG V GF + YSA DK G
Sbjct: 205 GSFGDVLSAGFELTYSAHSDKCG 227
>01_06_0326 - 28495621-28495655,28495726-28496512
Length = 273
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 360 GGFGPVAQEGFGIGYSAFPDKLG 428
G FG V GF + YSA DK G
Sbjct: 205 GSFGDVLSAGFELTYSAHSDKCG 227
>01_03_0114 -
12649104-12649141,12650137-12650245,12650500-12650691,
12650797-12650904,12650986-12651162,12652331-12652459,
12653314-12653589,12653667-12653916,12654909-12655561
Length = 643
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 257 FFSDLHKSEQVSIEALAHGSLF 192
FF+ LHK+EQV++E L ++
Sbjct: 389 FFTGLHKNEQVNMEILKEAQMY 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,794,854
Number of Sequences: 37544
Number of extensions: 343824
Number of successful extensions: 1042
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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