Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0338
         (648 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF487536-1|AAL93297.1|  504|Anopheles gambiae cytochrome P450 CY...    27   0.68 
AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.    24   3.6  
AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.       23   6.3  

>AF487536-1|AAL93297.1|  504|Anopheles gambiae cytochrome P450
           CYP6Y1 protein.
          Length = 504

 Score = 26.6 bits (56), Expect = 0.68
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 48  FKHGRTETMRPC-TEKTKAFCEALNVHKKSKDELRVAMGECSAYHSELVKQAAMG 209
           F  GR +   P  T+  + FCE LN   +S DE+ V     S Y  +++   A G
Sbjct: 138 FTSGRIKMTLPLITQVCERFCEHLNESLQSSDEIEV-HDLLSRYTIDVIGACAFG 191


>AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.
          Length = 187

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 331 VLCRLPV*WQVDLDQLHRRDSVL 399
           V C +P  WQV LD  ++ D VL
Sbjct: 49  VCCTVPRCWQVSLDSDYQIDVVL 71


>AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.
          Length = 525

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 324 STSTLSAPSVMAGGFGPVAQEGFGIGYSAFPDKL 425
           + + + AP+V  G  G   +E   +GY+ F +KL
Sbjct: 289 ANTQIGAPTVGGGTVGRYTREPGVMGYNEFCEKL 322


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 670,576
Number of Sequences: 2352
Number of extensions: 14021
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)