Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0338
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                25   0.83 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.8  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
 Frame = +3

Query: 267 PRPELFDSYEYKFLNKSILSTSTLSAPS---VMAGGFGPV------AQEGFGIGYSAFPD 419
           PR  + + Y+     K+ LS   +  P+   ++  GF P+         GFGI Y A   
Sbjct: 29  PRTPIKNVYKNNIETKNQLSPFNIDTPNRQKILKDGF-PIKCGTFLGSGGFGIVYKALYK 87

Query: 420 KLGAAVSSYKTHNSSTEFVQALHTSFLEITRIL 518
               A    +T   S       H SFL+ + I+
Sbjct: 88  GEQVAAKIIQTEKYSNMLNSEKHASFLKHSNIV 120


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 383 GGIRYWVLGFS 415
           GG+ YW  GF+
Sbjct: 75  GGLTYWAFGFA 85


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 350 CNGRWIWTSCTGG 388
           CNG W W   T G
Sbjct: 55  CNGLWRWIRLTYG 67


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 350 CNGRWIWTSCTGG 388
           CNG W W   T G
Sbjct: 93  CNGLWRWIRLTYG 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,760
Number of Sequences: 438
Number of extensions: 3997
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)