Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0338
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02600.2 68418.m00195 heavy-metal-associated domain-containin...    30   1.5  
At5g02600.1 68418.m00196 heavy-metal-associated domain-containin...    30   1.5  
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P...    29   2.0  
At2g18300.2 68415.m02134 basic helix-loop-helix (bHLH) family pr...    29   2.7  
At2g18300.1 68415.m02133 basic helix-loop-helix (bHLH) family pr...    29   2.7  
At5g48140.1 68418.m05946 polygalacturonase, putative / pectinase...    27   8.1  

>At5g02600.2 68418.m00195 heavy-metal-associated domain-containing
           protein low similarity to gi:3168840 copper homeostasis
           factor; contains Pfam heavy-metal-associated domain
           PF00403; predicted proteins, Arabidopsis thaliana
          Length = 319

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 400 PIPNPSCATGPNPPAITLGADKVLVLRIDL 311
           P P+P  ++ P+PP     +D+V+VLR+ L
Sbjct: 229 PPPSPPQSSPPSPPEKNSSSDQVVVLRVSL 258


>At5g02600.1 68418.m00196 heavy-metal-associated domain-containing
           protein low similarity to gi:3168840 copper homeostasis
           factor; contains Pfam heavy-metal-associated domain
           PF00403; predicted proteins, Arabidopsis thaliana
          Length = 319

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 400 PIPNPSCATGPNPPAITLGADKVLVLRIDL 311
           P P+P  ++ P+PP     +D+V+VLR+ L
Sbjct: 229 PPPSPPQSSPPSPPEKNSSSDQVVVLRVSL 258


>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family;similar
           to HMG I/Y like protein (GI:15706274) [Glycine
           max];similar to HMR1 protein (GI:4218141) [Antirrhinum
           majus]; similar to high mobility group protein
           (GI:1483173) [Canavalia gladiata]
          Length = 480

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -1

Query: 429 HLVYQEKPSTQYRIPPVQLVQI--HLPLHWEPTKYLY*ELIC 310
           H+V+Q +P TQ +IP  Q+ Q+  H+ +   P    Y E+IC
Sbjct: 36  HVVFQPQPQTQTQIPQPQMFQLSPHVSMPHPP----YSEMIC 73


>At2g18300.2 68415.m02134 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain ;supported by cDNA
           gi|20127067|gb|AF488597.1|
          Length = 337

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 237 LMKIAEENDIPRPELFDSYEYKFLNKSILSTSTLSAPSVMAGGFGPVAQEGFG 395
           L ++   +    PEL    ++   N   L  S+ S   ++  GFGP    GFG
Sbjct: 34  LQQVVSHSSNNSPELLQILQFHGSNNDELLESSFSQFQMLGSGFGPNYNMGFG 86


>At2g18300.1 68415.m02133 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain ;supported by cDNA
           gi|20127067|gb|AF488597.1|
          Length = 335

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 237 LMKIAEENDIPRPELFDSYEYKFLNKSILSTSTLSAPSVMAGGFGPVAQEGFG 395
           L ++   +    PEL    ++   N   L  S+ S   ++  GFGP    GFG
Sbjct: 34  LQQVVSHSSNNSPELLQILQFHGSNNDELLESSFSQFQMLGSGFGPNYNMGFG 86


>At5g48140.1 68418.m05946 polygalacturonase, putative / pectinase,
           putative strong similarity to polygalacturonase PGA3
           [Arabidopsis thaliana] GI:3152948; contains PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 395

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 298 YSYESNNSGLGISFSSAIFIRANKCLSKPWPMAACFTNS 182
           YS+E N SG+ I  +  +    N    K WP AAC T +
Sbjct: 243 YSHEENVSGIKI-INCTLQETDNGLRIKTWPSAACTTTA 280


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,807,261
Number of Sequences: 28952
Number of extensions: 287752
Number of successful extensions: 778
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)