Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0336
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...   100   1e-22
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   1.7  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    27   1.7  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   2.2  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    26   5.1  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   6.7  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   8.8  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score =  100 bits (240), Expect = 1e-22
 Identities = 63/180 (35%), Positives = 88/180 (48%), Gaps = 2/180 (1%)
 Frame = +2

Query: 5   RIRKTHPIFKIINNSLIDLPXPI*YFFLMKYRIPTSFMSNNSNYYWIIFNNILHSKY*NS 184
           +I K++P   + NN +ID P P    +   +    + +        I+           +
Sbjct: 2   KILKSNPFLALANNYMIDAPEPSNISYFWNFGSLLACVLVIQIVIGILLACFYIPNMDLA 61

Query: 185 FL*SKLYLPKCKLWLNNSNIHANGASFFFICIYLHIGRGIYYESFNLKYV*LXXXXXXXX 364
           FL  +  +            HANGASFFFI +YLHIGRG+YY S+               
Sbjct: 62  FLSVERIVRDVNYGFLLRAFHANGASFFFIFLYLHIGRGLYYGSYKYPRTMTWNIGVIIF 121

Query: 365 XXXXXXXX--YVLP*GQISFWGATVITNLLSAIPYLGTILVN*I*GGFAVDNATLTRFYT 538
                     Y LP  Q+SFWGATVITNLLSA+P++G  LV+ + GGF+V N TL RF++
Sbjct: 122 LLTIITAFLGYCLPANQMSFWGATVITNLLSAVPFIGDDLVHLLWGGFSVSNPTLNRFFS 181



 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 29/64 (45%), Positives = 41/64 (64%)
 Frame = +3

Query: 99  GSLLALCLIIQIITGLFLTIYYTANIEIAFYRVNYICRNVNYG*IIRTFMLMELHFFLFA 278
           GSLLA  L+IQI+ G+ L  +Y  N+++AF  V  I R+VNYG ++R F      FF F 
Sbjct: 33  GSLLACVLVIQIVIGILLACFYIPNMDLAFLSVERIVRDVNYGFLLRAFHANGASFF-FI 91

Query: 279 FIYI 290
           F+Y+
Sbjct: 92  FLYL 95


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 135 ITGLFLTIYYTANIEIAFYRVNYICRNVNYG*IIRTFMLMELHFFLFAF 281
           +TG+F      ++ E  F+R+ ++C    +  ++ +F+   LH F+F F
Sbjct: 1   MTGMFFFASLFSSFESLFFRLFFVCS--FFFPLLYSFIFATLHAFVFLF 47


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 340 NWNYNFIYTNSNCFHRLCLTLRSNIFLGGN 429
           NWN      +SN  +RLC TL  + FL GN
Sbjct: 132 NWNRLLQLDSSNLEYRLCFTL--SAFLSGN 159


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +1

Query: 340 NWNYNFIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNLR 495
           N +Y F + N      + L+  S + L  +   + I+CN L R+ +   N +
Sbjct: 45  NTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFK 96


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 367 NSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFR 468
           N  C+H++C +    IF  G     +  CN + R
Sbjct: 31  NPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 197 KLYLPKCKLWLNNSNIHANGASFFFICIYLHIGRGIYYESFNLK 328
           + Y  KCKLW ++ N  +       IC    IGRG+  + F+ K
Sbjct: 206 RYYCNKCKLWDDDPNKSSYHCDDCGIC---RIGRGLGDDYFHCK 246


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 233  YSTIVYISANIIY-SIKSYFNICCVIYC*K*SSNN 132
            Y  +  I+  + Y S  +Y+  CC +Y  K SSNN
Sbjct: 1979 YFLLTAIANQLRYPSSHTYYASCCFLYLFKSSSNN 2013


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,507
Number of Sequences: 5004
Number of extensions: 40658
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)