Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0336
         (620 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)         51   9e-07
SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)               47   1e-05
SB_33523| Best HMM Match : DUF323 (HMM E-Value=7.5e-31)                28   7.0  
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         27   9.3  
SB_34117| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)
          Length = 102

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 19/26 (73%), Positives = 23/26 (88%)
 Frame = +2

Query: 245 HANGASFFFICIYLHIGRGIYYESFN 322
           HANGAS FFIC+Y HIGRG+YY S++
Sbjct: 31  HANGASMFFICLYAHIGRGLYYGSYS 56



 Score = 32.3 bits (70), Expect = 0.33
 Identities = 12/28 (42%), Positives = 22/28 (78%)
 Frame = +3

Query: 156 IYYTANIEIAFYRVNYICRNVNYG*IIR 239
           ++Y A++ +AF  V++I R+VNYG ++R
Sbjct: 1   MHYCADVSLAFASVDHIMRDVNYGFLLR 28


>SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)
          Length = 135

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/50 (42%), Positives = 31/50 (62%)
 Frame = +2

Query: 389 YVLP*GQISFWGATVITNLLSAIPYLGTILVN*I*GGFAVDNATLTRFYT 538
           Y LP  QI +W   ++T +  AIP +G+ LV  + G  +V  +TLTRFY+
Sbjct: 64  YSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYS 113


>SB_33523| Best HMM Match : DUF323 (HMM E-Value=7.5e-31)
          Length = 611

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 194 SKLYLPKCKLWLNNSNIHANGASFFFICIYLHIGRGI 304
           +KLY  KC  W +++   AN AS F +   L +  G+
Sbjct: 231 TKLYFTKCAYWSHHTITPANYASLFALDCALSVINGL 267


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 382  HRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNLRGIC 504
            H +C+T R + F      Y  + C  +  + +S   L G+C
Sbjct: 931  HGICMTRRGDPFCVCTEGYTGLRCKVVINHCLSNPCLNGVC 971


>SB_34117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 322 LKICMINWNYNFIYTNSNCFHRLCLTLRSNIFLG 423
           LKI M+N+ Y FI+    C     L LRSN+  G
Sbjct: 110 LKILMVNYRYKFIFIVKECKVMTDL-LRSNVDSG 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,487,379
Number of Sequences: 59808
Number of extensions: 255592
Number of successful extensions: 352
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)