Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0336
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta...   100   9e-22
At1g12170.1 68414.m01409 F-box family protein contains F-box dom...    33   0.20 

>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
           Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
           ontains Pfam profile PF00032: Cytochrome
           b(C-terminal)/b6/petD; 99% identical to  apocytochrome B
           (GI:6851014), cytochrome b (GI:402962), and Cytochrome b
           (Swiss-Prot:P42792) [Arabidopsis thaliana]
          Length = 393

 Score =  100 bits (239), Expect = 9e-22
 Identities = 55/128 (42%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
 Frame = +2

Query: 242 IHANGASFFFICIYLHIGRGIYYESFNL--KYV*LXXXXXXXXXXXXXXXXYVLP*GQIS 415
           +HANGAS F I +YLHI RG+Y+ S++   ++V                  YVLP GQ+S
Sbjct: 87  MHANGASMFLIVVYLHIFRGLYHASYSSPREFVWCLGVVIFLLMIVTAFIGYVLPWGQMS 146

Query: 416 FWGATVITNLLSAIPYLGTILVN*I*GGFAVDNATLTRFYTXXXXXXXXXXXXXXXXXXX 595
           FWGATVIT+L SAIP +G  +V  + GGF+VDNATL RF++                   
Sbjct: 147 FWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHLLPFILVGASLLHLAA 206

Query: 596 XXQTGSNN 619
             Q GSNN
Sbjct: 207 LHQYGSNN 214



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/68 (36%), Positives = 41/68 (60%)
 Frame = +3

Query: 36  SLTTH*LTYLXPXXXXXXXXXGSLLALCLIIQIITGLFLTIYYTANIEIAFYRVNYICRN 215
           +L  H + Y  P         G L  +CL+IQI+TG+FL ++YT ++++AF  V +I R+
Sbjct: 18  TLNQHLVDYPTPSNLSYWWGFGPLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRD 77

Query: 216 VNYG*IIR 239
           V  G ++R
Sbjct: 78  VEGGWLLR 85


>At1g12170.1 68414.m01409 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 364

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 104 PTSFMSNNSNYYWIIFNNILHSKY*NSFL*SK-LYLPKCKLWLNNSNIHANGASFF 268
           P S +S N N YW++ N   H  +  SF  SK +Y   C L  N ++ H    S F
Sbjct: 196 PLSDVSLNGNLYWVVSNGETHECFIESFDFSKEIYKCFCTLPWNYNSFHVPVLSTF 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,461,829
Number of Sequences: 28952
Number of extensions: 184813
Number of successful extensions: 281
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)