Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0335
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)           34   0.068
SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)                33   0.089
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)               33   0.16 
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)                31   0.63 
SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         27   5.9  
SB_7503| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)             27   7.7  
SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)              27   7.7  

>SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)
          Length = 117

 Score = 33.9 bits (74), Expect = 0.068
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +3

Query: 159 VCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLR 281
           V SH  LSG GC G+GR +  E++ R      +A LQ +LR
Sbjct: 56  VWSHLHLSGGGC-GKGRHLPKEKQSRGSPPISAALLQHILR 95


>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
          Length = 155

 Score = 33.5 bits (73), Expect = 0.089
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +1

Query: 139 IASNMTVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 300
           ++S+M    L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 46  MSSDMKSLVLLIACFSVARATEDDFCKER-DAGC--YVDLKDCSKYY-QCDDFH 95


>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
          Length = 126

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 352 YHYLLSASYFNNYQTNREGFAKLFRKLSDDSWE 450
           Y YL  A +F+    N  GF K F+K S + WE
Sbjct: 50  YTYLSMAFHFDRDDINLPGFNKFFKKASKEEWE 82


>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
          Length = 339

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 151 MTVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 300
           M    L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 1   MKSLVLLIACFSVARATEDDYCKER-DAGC--YVDLKDCSKYY-QCDDFH 46


>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 328 ASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDD 441
           +++ L    HYL S + F NYQ   +G   LF++  D+
Sbjct: 326 STILLNAGLHYLESTN-FTNYQRLIDGIVLLFKRAKDE 362


>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 331 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWE 450
           +L L  SY Y   A YF+    +  GF K F+K + +  E
Sbjct: 21  NLELYASYVYTSMACYFDREDVHLPGFHKFFKKQAHEERE 60


>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 330 LTVFETFLPLSPVGLLLQQLPDEQGRIREALQEIIGRFVGENHW 461
           L V  TF P S V L +  +PD +G  RE L  ++    G   W
Sbjct: 32  LLVSATFFPPSTVTLRVSLVPDIRGTSREPLYCLLQSSSGLEKW 75


>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 147 KYDGVCSHRCLSG 185
           K+D VCSHRC SG
Sbjct: 316 KFDQVCSHRCPSG 328


>SB_7503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 370 ASYFNNYQTNREGFAKLFRKLSDDSWE 450
           A +F+    N  GF K F+K S + WE
Sbjct: 30  AFHFDRDDINLPGFNKFFKKASKEEWE 56


>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 127 RILEKITSAFDVCRKYCLYTHWRRRR 50
           R L+ + SA  VC +YCLY  W R R
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRAR 123


>SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)
          Length = 184

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 127 RILEKITSAFDVCRKYCLYTHWRRRR 50
           R L+ + SA  VC +YCLY  W R R
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRAR 123


>SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)
          Length = 245

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 127 RILEKITSAFDVCRKYCLYTHWRRRR 50
           R L+ + SA  VC +YCLY  W R R
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRAR 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,209,073
Number of Sequences: 59808
Number of extensions: 283063
Number of successful extensions: 750
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)