Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0335
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   0.94 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.2  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   3.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   3.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   3.8  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   3.8  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   3.8  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   3.8  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   3.8  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   3.8  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   3.8  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   3.8  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   8.7  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 16/68 (23%), Positives = 26/68 (38%)
 Frame = +1

Query: 250 LSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRK 429
           L  P   +  G F+  + +  +L  +      +  HYL + S   NY   +    + F K
Sbjct: 541 LGKPSRISKQGLFRRFYNLLGKLSTIEDADKNQCRHYLDAKSSVQNYSLAKHQLKEAFVK 600

Query: 430 LSDDSWEK 453
               SW K
Sbjct: 601 AHLGSWVK 608


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 207 RLMLSERRPRMQTDFKSAAL 266
           RL   +RR RM+ D+K  AL
Sbjct: 407 RLAEQDRRERMEFDWKQVAL 426


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 343 KRSYHYLLSASYFNNYQTNREGFAKLF 423
           ++S  + + +S  NNY  N   + KL+
Sbjct: 74  EKSKEHKIISSLSNNYNYNNNNYKKLY 100


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 343 KRSYHYLLSASYFNNYQTNREGFAKLF 423
           ++S  + + +S  NNY  N   + KL+
Sbjct: 74  EKSKEHKIISSLSNNYNYNNNNYKKLY 100


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 343 KRSYHYLLSASYFNNYQTNREGFAKLF 423
           ++S  + + +S  NNY  N   + KL+
Sbjct: 74  EKSKEHKIISSLSNNYNYNNNNYKKLY 100


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 340 LKRSYHYLLSASYFNNYQTN 399
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 340 LKRSYHYLLSASYFNNYQTN 399
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 340 LKRSYHYLLSASYFNNYQTN 399
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 340 LKRSYHYLLSASYFNNYQTN 399
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 340 LKRSYHYLLSASYFNNYQTN 399
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 340 LKRSYHYLLSASYFNNYQTN 399
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 340 LKRSYHYLLSASYFNNYQTN 399
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 119 RKNNKCV*RMSKVLPLHTLAQKAT 48
           R +N    R+SKV+  HT+  K T
Sbjct: 5   RLSNVATFRLSKVMLDHTINSKKT 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,928
Number of Sequences: 438
Number of extensions: 2625
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)