Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0335
         (467 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44630.1 68415.m05555 kelch repeat-containing F-box family pr...    29   1.2  
At5g17220.1 68418.m02018 glutathione S-transferase, putative           28   2.7  
At1g68670.1 68414.m07846 myb family transcription factor contain...    27   4.8  
At5g63420.1 68418.m07962 metallo-beta-lactamase family protein         27   6.3  
At1g13300.1 68414.m01544 myb family transcription factor contain...    27   6.3  
At4g37330.1 68417.m05287 cytochrome P450 family protein                27   8.4  
At1g50890.1 68414.m05722 expressed protein                             27   8.4  

>At2g44630.1 68415.m05555 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF00646: F-box domain, PF01344: Kelch motif
          Length = 372

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +1

Query: 310 NELKALASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKT 456
           NE    AS+ L R  + L S  Y N+Y T R+G  + +  + +D+W KT
Sbjct: 218 NEWFTHASVSLDRKVYALNSREYMNSYDT-RDGSYQRY-TIPEDNWWKT 264


>At5g17220.1 68418.m02018 glutathione S-transferase, putative
          Length = 214

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 274 YYGQFKDNHVVANELKALASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSD-DSWE 450
           Y  +   N  +A E   +A L    +  YL+S +  N     R  F + + ++SD  SW+
Sbjct: 147 YNNRLSSNRFLAGEEFTMADLTHMPAMGYLMSITDINQMVKARGSFNRWWEEISDRPSWK 206

Query: 451 KTIGL 465
           K + L
Sbjct: 207 KLMVL 211


>At1g68670.1 68414.m07846 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 354

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 300 RCSERTEGI-SLTVFETFLPLSPVGLLLQQLPDEQ 401
           +CSE+T  +    VFE F+P+  +  L +++ +E+
Sbjct: 63  QCSEQTTSVCGGPVFEEFIPIKKISSLCEEVQEEE 97


>At5g63420.1 68418.m07962 metallo-beta-lactamase family protein 
          Length = 911

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 461 PMVFSHESSDNFLKSFANPS 402
           P+  S E SD+F KSF NPS
Sbjct: 749 PVGSSSEESDDFWKSFINPS 768


>At1g13300.1 68414.m01544 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 344

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 291 GQPRCSERTEGISLTVFETFLPL 359
           GQP CSE+T G    V E FL +
Sbjct: 66  GQPECSEQTTGECGPVLEQFLTI 88


>At4g37330.1 68417.m05287 cytochrome P450 family protein
          Length = 492

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 289 KDNHVVANELKALASLYLKRSYHYLLSASYFNNYQTNR 402
           K++ V+AN  K   S +L  +  YLLSASY ++++  R
Sbjct: 93  KNDVVLANRPKFTISKHLGYNATYLLSASYGDHWRNLR 130


>At1g50890.1 68414.m05722 expressed protein
          Length = 821

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 185 LWVCWPRKTHAIRTSTKDA 241
           +W CW    HA+R    D+
Sbjct: 679 IWTCWSNSVHALRVGDTDS 697


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,761,486
Number of Sequences: 28952
Number of extensions: 194536
Number of successful extensions: 537
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)