Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0334
         (679 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O76202 Cluster: Protein ultraspiracle homolog; n=5; Dit...   100   4e-20
UniRef50_Q4P449 Cluster: Putative uncharacterized protein; n=1; ...    33   8.4  
UniRef50_P0A134 Cluster: Transposase for insertion sequences IS1...    33   8.4  

>UniRef50_O76202 Cluster: Protein ultraspiracle homolog; n=5;
           Ditrysia|Rep: Protein ultraspiracle homolog -
           Choristoneura fumiferana (Spruce budworm)
          Length = 472

 Score =  100 bits (239), Expect = 4e-20
 Identities = 57/100 (57%), Positives = 63/100 (63%), Gaps = 7/100 (7%)
 Frame = +1

Query: 361 MSSVAKKDKPTMSVTALINRAWXXXXXXXXXXXXXXXXXHSNFLQPMATPSTT-----PN 525
           MSSVAKKDKPTMSVTALIN  W                  +  LQ + T S       P 
Sbjct: 1   MSSVAKKDKPTMSVTALIN--WARPAPPGPPQPQSASPAPAAMLQQLPTQSMQSLNHIPT 58

Query: 526 VE--LDIQWLNIESGFMSPMSPPEMKPDTAMLDGFRDDST 639
           V+  LD+QWLN+E GFMSPMSPPEMKPDTAMLDG RDD+T
Sbjct: 59  VDCSLDMQWLNLEPGFMSPMSPPEMKPDTAMLDGLRDDAT 98


>UniRef50_Q4P449 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 1973

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
 Frame = -1

Query: 406 QLPTLSVYL--SSPRSTWPHTNILTSL*THCTSVTASVNCQNSHVHNTIMKRDGHDQFTP 233
           Q  TLS +   S P +++PH  +L +   H T  T++     +   NT+   D      P
Sbjct: 341 QRATLSAFADGSIPGTSFPHPGVLATTGAHATGETST--STEAEFENTVQPWDSP---RP 395

Query: 232 VLMNIMVKIG*SGKIIRAKATERAVTVIRTADLSVKPVGDKADI 101
           V  ++ V  G       +K  +   T IRTA L V+P   K+ I
Sbjct: 396 VKRSMTVSAGSDA----SKRPKHLGTAIRTAALPVQPSATKSRI 435


>UniRef50_P0A134 Cluster: Transposase for insertion sequences
           IS1326/IS1353; n=54; root|Rep: Transposase for insertion
           sequences IS1326/IS1353 - Pseudomonas aeruginosa
          Length = 507

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -2

Query: 411 QRSYRHCRFIFLRHARHGHTQTSSHHYKLTALQ*RP 304
           Q    H R     HAR GHTQ   HHY L+ LQ +P
Sbjct: 362 QHIAEHPRLFGSGHARRGHTQYDWHHY-LSVLQKKP 396


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,301,214
Number of Sequences: 1657284
Number of extensions: 10186843
Number of successful extensions: 25240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25228
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)