Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0334
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    30   0.35 
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    29   0.82 
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   3.3  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.8  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   7.6  

>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 113 VPDGLDAQVCGPD-YRHRALGRFRTYYFTGLANFNHNIHQNRRKLIVTIAFHDRIVNV 283
           V DGL +    P  Y HR +  F  YY+ G+ ++  N  + R  L+++I     I N+
Sbjct: 295 VIDGLISNQSIPVVYSHRTMDGFSDYYYNGIPSYFQNPQKARYMLMLSINAGYSIQNI 352


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 113 VPDGLDAQVCGPD-YRHRALGRFRTYYFTGLANFNHNIHQNRRKLIVTIAFHDRIVNV 283
           V DGL +    P  Y HR +  F  YY+ G+  +  N  + R  L+++I     I N+
Sbjct: 295 VIDGLISNQSIPVVYSHRTMDGFSDYYYNGIPAYFQNPQKARYMLMLSINAGYSIQNI 352


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -1

Query: 403 LPTLSVYLSSPRSTWPHTNILTSL*THCTSVTASVNCQNSHVHNTIMKRDGHDQFTPVLM 224
           L  L+  L+S R  +   NIL    T C+++T    CQ          R+ H  F   L+
Sbjct: 54  LNALASLLNSFREGYCTVNILFDKQTCCSTLTEDYECQ-----EFFFWRNNHSVFVSCLI 108

Query: 223 NIMVKIG 203
            + V +G
Sbjct: 109 YVSVSVG 115


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 476 SIRISCSQWLHLQPHPMLNSIYNG*T*SQGLCR 574
           +I ++C+  LH+Q H  L SI       + LCR
Sbjct: 580 AIGLACNMRLHIQSHLSLQSINEDMDSDEALCR 612


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 343 GCLCVAMSSVAKKDKPTMSVTAL 411
           G L + +SS  KKDK T SVT L
Sbjct: 154 GILSLQLSSSNKKDKNTSSVTTL 176


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 344 PHITINSLHFSNGLRKLSKFTRSQYDHETRWSRSIYACFDEYYG 213
           PH  I + +FS   +++ +FT S+       ++S+Y  +D  YG
Sbjct: 229 PH-GIYNFNFSAPNKRMQRFTASEATTVNGQNQSVYLTYDVPYG 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,517
Number of Sequences: 5004
Number of extensions: 42244
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)