Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0334
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1172| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              29   3.5  
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_1172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 370 RSTWPHTNILTSL*THCTSVT--ASVNCQNSHVHNTIMKRDGHDQF 239
           RSTW  + ++ +L      V   +S+NC N++ +  I+  DG+DQF
Sbjct: 130 RSTWVESLLVITLSRGILWVLEFSSLNCNNNNFNLNIVSVDGYDQF 175


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -3

Query: 350 KHPHITINSLHFSNGLRKLSKFTRSQYDHETRWSRSIY 237
           +H +IT    H SN  R+    TRS+Y+H T+W+R  Y
Sbjct: 571 RHEYITCG--HDSNPSRQR---TRSRYEHITKWTRPPY 603



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -3

Query: 377 FATLDMATH---KHPHITINSLHFSNGLRKLSKFTRSQYDHETRWSRSIY 237
           + TL   TH   ++ HIT+ +    +    ++K+TR  Y+H T+W+R  Y
Sbjct: 843 YITLWTRTHHGARYEHITVWT---RSPYEHITKWTRPPYEHITKWTRPPY 889



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -3

Query: 377 FATLDMATH---KHPHITINSLHFSNGLRKLSKFTRSQYDHETRWSRSIY 237
           + TL   TH   ++ HIT+ +         ++K+TR  Y+H T+W+R  Y
Sbjct: 187 YITLWTRTHHGARYEHITVWT---RPPYEHITKWTRPPYEHITKWTRPPY 233


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 179 ESDRARGDGNPDRRLERQARRGQSRHRCDIVISSVIAPRAPIS 51
           E D A  DG   + + ++ARR +  HR   V+ S + P   ++
Sbjct: 145 EEDAAVDDGWEGKEVRKEARRQEEEHRKVTVVHSKLHPEQSVT 187


>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -3

Query: 377 FATLDMATH---KHPHITINSLHFSNGLRKLSKFTRSQYDHETRWSRSIY 237
           + TL   TH   ++ HIT+ +         ++K+TR  Y+H T+W+R  Y
Sbjct: 131 YITLWTRTHHGARYEHITVWT---RPPYEHITKWTRPPYEHITKWTRPPY 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,549,443
Number of Sequences: 59808
Number of extensions: 350744
Number of successful extensions: 997
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)