Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0334
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022979-8|AAB69906.2|  330|Caenorhabditis elegans Serpentine re...    31   0.57 
AL021483-3|CAA16343.1|  331|Caenorhabditis elegans Hypothetical ...    27   9.3  
AC006680-5|AAK72301.2|  300|Caenorhabditis elegans Serpentine re...    27   9.3  

>AF022979-8|AAB69906.2|  330|Caenorhabditis elegans Serpentine
           receptor, class j protein38 protein.
          Length = 330

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 420 PIDQRSYRHCRFIFLRHARHGHTQTSSHHYKLTA 319
           PID  +YR+C F+ LRH      + S  HY + A
Sbjct: 62  PIDIHNYRYCFFLILRHG--WFVEISDFHYHMAA 93


>AL021483-3|CAA16343.1|  331|Caenorhabditis elegans Hypothetical
           protein Y38H8A.4 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 490 LQPMATPSTTPNVELDIQWLNIESGFMSPMSPPEM-KPDTA 609
           LQP A    T     + +WL  +  +M P  PP++  P TA
Sbjct: 273 LQPHAPNRPTYKAICESEWLKNQPYYMKPNEPPKLPSPSTA 313


>AC006680-5|AAK72301.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein60 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 119 DGLDAQVCGPDYRHRALGRFRTYYFTGLAN 208
           DG+   +C P+ R+  +GR   Y  TG  N
Sbjct: 258 DGMIVVMCNPEVRNFLMGRKNVYQITGPQN 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,313,437
Number of Sequences: 27780
Number of extensions: 248496
Number of successful extensions: 666
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)