Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0334
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    28   0.071
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    28   0.071
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.2  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   4.7  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   4.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.2  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 0.071
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
 Frame = +1

Query: 544 WLNIESGFMS-----PMSPPEMKPDTAML 615
           WL++++  MS     P SP +MKPDTA L
Sbjct: 29  WLSLDNSNMSMSSVGPQSPLDMKPDTASL 57



 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +1

Query: 376 KKDKPTMSVTALI 414
           KK+KP MSVTA+I
Sbjct: 3   KKEKPMMSVTAII 15


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 0.071
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
 Frame = +1

Query: 544 WLNIESGFMS-----PMSPPEMKPDTAML 615
           WL++++  MS     P SP +MKPDTA L
Sbjct: 29  WLSLDNSNMSMSSVGPQSPLDMKPDTASL 57



 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +1

Query: 376 KKDKPTMSVTALI 414
           KK+KP MSVTA+I
Sbjct: 3   KKEKPMMSVTAII 15


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 366 RHGHTQTSSHHYKLTALQ 313
           RH H Q   HH + TA+Q
Sbjct: 140 RHHHLQNHHHHLQSTAVQ 157


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 89  QCHNDVCFVPDGLDAQVCGPDYR 157
           QC ND     DG D   CG  Y+
Sbjct: 102 QC-NDTSIGVDGCDLMCCGRGYK 123


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 89  QCHNDVCFVPDGLDAQVCGPDYR 157
           QC ND     DG D   CG  Y+
Sbjct: 103 QC-NDTSIGVDGCDLMCCGRGYK 124


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 476 SIRISCSQWLHLQPHPMLNSI 538
           SIR +  QW   QP P++  I
Sbjct: 479 SIRGAIQQWTCRQPEPLIELI 499


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,706
Number of Sequences: 438
Number of extensions: 3005
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)