Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0333
(536 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137; Eukar... 257 1e-67
UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58; Eukary... 243 2e-63
UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal ... 167 1e-40
UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e cont... 154 1e-36
UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia... 130 3e-29
UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative; ... 120 3e-26
UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1; Encepha... 117 2e-25
UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9; Euryar... 112 6e-24
UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4; Euryar... 111 1e-23
UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4; Thermo... 110 2e-23
UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10; Archa... 108 9e-23
UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11; Archa... 107 2e-22
UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, wh... 106 3e-22
UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4; Methan... 99 7e-20
UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 95 9e-19
UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiell... 92 6e-18
UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5; Haloba... 91 1e-17
UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p... 89 5e-17
UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza ... 85 1e-15
UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 84 2e-15
UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1; uncul... 81 2e-14
UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1; Nanoar... 79 6e-14
UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n... 75 8e-13
UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory ... 60 2e-08
UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14; Bacter... 55 9e-07
UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole geno... 49 8e-05
UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycopla... 46 4e-04
UniRef50_A6PT06 Cluster: Ribosomal protein S13; n=1; Victivallis... 46 7e-04
UniRef50_Q7QRY8 Cluster: GLP_549_7513_8304; n=1; Giardia lamblia... 46 7e-04
UniRef50_O66486 Cluster: 30S ribosomal protein S13; n=28; cellul... 42 0.007
UniRef50_Q6G2Y7 Cluster: 30S ribosomal protein S13; n=20; cellul... 41 0.021
UniRef50_Q5NQ42 Cluster: 30S ribosomal protein S13; n=107; cellu... 40 0.048
UniRef50_A0CSW0 Cluster: Chromosome undetermined scaffold_26, wh... 37 0.26
UniRef50_A6RYD3 Cluster: Putative uncharacterized protein; n=1; ... 36 0.59
UniRef50_Q6UVP6 Cluster: Ribosomal protein S13; n=1; Pseudendocl... 28 0.65
UniRef50_P46747 Cluster: Mitochondrial ribosomal protein S13; n=... 36 0.78
UniRef50_Q4WP11 Cluster: 40S ribosomal protein S13; n=5; Eurotio... 35 1.4
UniRef50_A1CXK9 Cluster: 40S ribosomal protein S13; n=7; Pezizom... 35 1.4
UniRef50_Q8FS35 Cluster: 30S ribosomal protein S13; n=42; Bacter... 35 1.4
UniRef50_Q9TCB7 Cluster: Ribosomal protein S13; n=1; Nephroselmi... 34 1.8
UniRef50_Q0QIP8 Cluster: Ribosomal protein S13; n=1; Oltmannsiel... 34 1.8
UniRef50_Q5B4R2 Cluster: Putative uncharacterized protein; n=1; ... 34 1.8
UniRef50_A6LHC7 Cluster: Putative outer membrane protein, probab... 34 2.4
UniRef50_O21258 Cluster: Ribosomal protein S13; n=1; Reclinomona... 34 2.4
UniRef50_O59772 Cluster: Mitochondrial ribosomal protein subunit... 34 2.4
UniRef50_Q98JF7 Cluster: Mll1963 protein; n=1; Mesorhizobium lot... 33 3.1
UniRef50_Q5CLQ5 Cluster: COG1752: esterase of the alpha-beta hyd... 33 4.2
UniRef50_Q6CFI9 Cluster: Yarrowia lipolytica chromosome B of str... 33 4.2
UniRef50_Q2AKW7 Cluster: Ribosomal protein S13; n=1; Bacillus we... 33 5.5
UniRef50_Q026Q4 Cluster: Trigger factor; n=1; Solibacter usitatu... 33 5.5
UniRef50_A6Q707 Cluster: Periplasmic nitrate reductase component... 33 5.5
UniRef50_A0NKF0 Cluster: Rhamnosyltransferase; n=1; Oenococcus o... 33 5.5
UniRef50_Q8W9S0 Cluster: Ribosomal protein S13; n=1; Mesostigma ... 33 5.5
UniRef50_Q7PY55 Cluster: ENSANGP00000013280; n=4; Endopterygota|... 33 5.5
UniRef50_Q24DA0 Cluster: Putative uncharacterized protein; n=3; ... 33 5.5
UniRef50_A0DZU7 Cluster: Chromosome undetermined scaffold_70, wh... 33 5.5
UniRef50_A1L3M1 Cluster: LOC100037042 protein; n=1; Xenopus laev... 32 7.3
UniRef50_Q6A6Q8 Cluster: 30S ribosomal protein S13; n=32; cellul... 32 7.3
UniRef50_P42732 Cluster: 30S ribosomal protein S13, chloroplast ... 32 7.3
UniRef50_Q8ZXT5 Cluster: Reverse gyrase [Includes: Helicase (EC ... 30 7.5
UniRef50_Q4RUT5 Cluster: Chromosome 12 SCAF14993, whole genome s... 32 9.6
UniRef50_A3IUX9 Cluster: Putative uncharacterized protein; n=1; ... 32 9.6
UniRef50_A7S3C9 Cluster: Predicted protein; n=1; Nematostella ve... 32 9.6
UniRef50_P15758 Cluster: Mitochondrial ribosomal protein S13; n=... 32 9.6
>UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137;
Eukaryota|Rep: 40S ribosomal protein S18 - Drosophila
melanogaster (Fruit fly)
Length = 152
Score = 257 bits (629), Expect = 1e-67
Identities = 117/135 (86%), Positives = 129/135 (95%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECT 207
MSLVIP+KFQHILRIMNTNIDGKRKV AMTAIKGVG RYSNIVLKKAD+DL KRAGECT
Sbjct: 1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60
Query: 208 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 387
EEEV+K++TI+SNP QYK+P+WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61 EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120
Query: 388 RGMRHYWGLRVRGQH 432
RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135
>UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58;
Eukaryota|Rep: 40S ribosomal protein S18 - Homo sapiens
(Human)
Length = 152
Score = 243 bits (594), Expect = 2e-63
Identities = 107/135 (79%), Positives = 127/135 (94%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECT 207
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIKGVG RY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 208 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 387
E+EVE++ITIM NPRQYKIPDWFLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAH
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 388 RGMRHYWGLRVRGQH 432
RG+RH+WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135
>UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal
protein S18; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S18 - Rattus norvegicus
Length = 170
Score = 167 bits (406), Expect = 1e-40
Identities = 80/134 (59%), Positives = 106/134 (79%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECT 207
MSLVI +K QHIL+++NTNID +++ FA+TA KG RY+++VL+KA IDL K AGE T
Sbjct: 1 MSLVISEKSQHILQVLNTNIDEQQETAFAITATKGAEQRYAHVVLRKAGIDLTKMAGELT 60
Query: 208 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 387
E++VE++ITIM NPRQY+IP QK + DG+ SQ+ ++ LD+KLRE+LERLKKIRAH
Sbjct: 61 EDKVERVITIMQNPRQYEIP------QKGVRDGRCSQVPANGLDNKLREELERLKKIRAH 114
Query: 388 RGMRHYWGLRVRGQ 429
RG+RH+WGL V Q
Sbjct: 115 RGLRHFWGLHVHCQ 128
>UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: ribosomal protein S13p/S18e containing
protein - Tetrahymena thermophila SB210
Length = 155
Score = 154 bits (374), Expect = 1e-36
Identities = 72/137 (52%), Positives = 99/137 (72%), Gaps = 2/137 (1%)
Frame = +1
Query: 28 MSLVIPDK--FQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGE 201
MS VI + F++I RI+NTNIDGKR A+T I+G+G R++ I+ K ID + RAG
Sbjct: 1 MSFVIEKESDFKYIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGL 60
Query: 202 CTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIR 381
TE++ KI ++++P + IP W LNR D DGK Q+ S+ LD+K+REDLERLKKI+
Sbjct: 61 LTEDQCNKITDLIADPEAHGIPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIK 120
Query: 382 AHRGMRHYWGLRVRGQH 432
+HRG+RH+WGL+VRGQH
Sbjct: 121 SHRGLRHFWGLKVRGQH 137
>UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_8004_7540 - Giardia lamblia ATCC
50803
Length = 154
Score = 130 bits (313), Expect = 3e-29
Identities = 59/134 (44%), Positives = 88/134 (65%)
Frame = +1
Query: 31 SLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTE 210
++V P+ ++ +LR+ NTNI GK + A+ IKG+G R++N+ LKKA+ID+ KRAGE T
Sbjct: 3 TIVQPNDYRDLLRMFNTNIQGKVVLECALVGIKGIGRRFANVALKKANIDVHKRAGELTA 62
Query: 211 EEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 390
E + ++ ++ +P + IP W LNR D GK + + + S R DLERL+K R R
Sbjct: 63 AEEDALMKVLEDPLSHGIPAWMLNRNNDFESGKDMHILVNTIASTHRADLERLRKTRCER 122
Query: 391 GMRHYWGLRVRGQH 432
G+RH+ L+VRGQH
Sbjct: 123 GVRHHHNLKVRGQH 136
>UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative;
n=3; Trichomonas vaginalis G3|Rep: Ribosomal protein
S13p/S18e, putative - Trichomonas vaginalis G3
Length = 155
Score = 120 bits (288), Expect = 3e-26
Identities = 52/129 (40%), Positives = 91/129 (70%)
Frame = +1
Query: 43 PDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVE 222
P F+ ++R+++TN+DG+R + A+T I G+G R++ V+++A +D +RAG T +E E
Sbjct: 8 PAAFRDMVRMLSTNVDGRRPLYLALTNISGIGRRFAYAVVRRAGLDPLRRAGTLTPKEEE 67
Query: 223 KIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 402
I++I+ NP +++IP W LNR+ D G+ + +++L + +R ++ER+KK+R RG+RH
Sbjct: 68 LIVSIIQNPTEHQIPVWMLNRRFDRATGQNTHWVATDLSANIRAEIERMKKMRMKRGIRH 127
Query: 403 YWGLRVRGQ 429
GL+VRGQ
Sbjct: 128 GLGLKVRGQ 136
>UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S18
- Encephalitozoon cuniculi
Length = 153
Score = 117 bits (281), Expect = 2e-25
Identities = 57/129 (44%), Positives = 86/129 (66%)
Frame = +1
Query: 43 PDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVE 222
P + Q+I+RI NTNIDG +++ FA+T I+G+G+R + + K+ IDL KRAGE E+E++
Sbjct: 7 PAEVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMK 66
Query: 223 KIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 402
+I + +P IP+ ++N Q+DI+DG S L + LD+ LR +ER KK + R R
Sbjct: 67 RISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRL 126
Query: 403 YWGLRVRGQ 429
GL+VRGQ
Sbjct: 127 DVGLKVRGQ 135
>UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanococcus jannaschii
Length = 150
Score = 112 bits (269), Expect = 6e-24
Identities = 51/127 (40%), Positives = 85/127 (66%)
Frame = +1
Query: 49 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKI 228
+F++++R+ T++DG +K++ A+ I GVG + +++ A +D +K AG TEEEV+KI
Sbjct: 5 EFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKI 64
Query: 229 ITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 408
++++P ++ IP W NR+KD V G+ + S+L +ED+ RLK+IR +RG+RH
Sbjct: 65 EEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHEL 124
Query: 409 GLRVRGQ 429
GL RGQ
Sbjct: 125 GLPCRGQ 131
>UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanosarcina acetivorans
Length = 162
Score = 111 bits (266), Expect = 1e-23
Identities = 52/128 (40%), Positives = 80/128 (62%)
Frame = +1
Query: 46 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEK 225
++ +H++RIMNT++ G + V +A+T + GVG R + ++ K A +D G EEEV K
Sbjct: 18 EELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAK 77
Query: 226 IITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 405
+ T + +P W LNRQKD+ G+ L +++ RED+ LKK+RA+RG+RH
Sbjct: 78 LDTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHE 136
Query: 406 WGLRVRGQ 429
GL+VRGQ
Sbjct: 137 RGLKVRGQ 144
>UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S13P -
Thermoplasma acidophilum
Length = 171
Score = 110 bits (265), Expect = 2e-23
Identities = 47/126 (37%), Positives = 89/126 (70%)
Frame = +1
Query: 52 FQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKII 231
FQ+I+RI N +++G+R + A++ +KG+G R ++ ++ D+ +DK+ GE EE++EK+
Sbjct: 28 FQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLR 87
Query: 232 TIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWG 411
+ ++Y +P+W LN +++ V GK L S++L+ +++ED+ +KKIR+++G+RH G
Sbjct: 88 EYVE-AKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKG 146
Query: 412 LRVRGQ 429
+VRGQ
Sbjct: 147 KKVRGQ 152
>UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10;
Archaea|Rep: 30S ribosomal protein S13P - Sulfolobus
tokodaii
Length = 172
Score = 108 bits (259), Expect = 9e-23
Identities = 47/127 (37%), Positives = 84/127 (66%)
Frame = +1
Query: 49 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKI 228
+F++I+R+ ++DG KV +A+ +KG+G + ++ K +D D+R GE ++E+++KI
Sbjct: 6 QFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKI 65
Query: 229 ITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 408
+++ + ++P+W NR+KD G L +S+L +R D+ER KKI++ RG+RH
Sbjct: 66 ENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSL 125
Query: 409 GLRVRGQ 429
GL+VRGQ
Sbjct: 126 GLKVRGQ 132
>UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11;
Archaea|Rep: 30S ribosomal protein S13P - Uncultured
methanogenic archaeon RC-I
Length = 224
Score = 107 bits (256), Expect = 2e-22
Identities = 50/128 (39%), Positives = 83/128 (64%)
Frame = +1
Query: 46 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEK 225
D+ ++I+RI NT++DG + V FA+T IKG+G R S I+ ++A +D G E+V+K
Sbjct: 67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDK 126
Query: 226 IITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 405
+ ++ N + +P W LNR++DI G+ L +L ++ED+ +KKIR+++G+RH
Sbjct: 127 LRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHE 185
Query: 406 WGLRVRGQ 429
G +VRGQ
Sbjct: 186 RGQKVRGQ 193
>UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_89,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 193
Score = 106 bits (255), Expect = 3e-22
Identities = 56/134 (41%), Positives = 91/134 (67%), Gaps = 4/134 (2%)
Frame = +1
Query: 28 MSLVIP--DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGE 201
MSLV+ D+F+ I+RI+NTN+DGK+++ + + +IKG+G R++ + K ++L KRAGE
Sbjct: 1 MSLVLEKADQFRQIIRILNTNVDGKQQMAYEIRSIKGIGRRFAIQICKVLRLNLTKRAGE 60
Query: 202 CTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIR 381
T+EE KI ++ QY +D+ +GK ++T++ L++KLREDLER+KKI+
Sbjct: 61 LTDEEAHKITEVIKMVPQY---------IRDLKNGKNYEVTTNELETKLREDLERIKKIK 111
Query: 382 AHRG--MRHYWGLR 417
+ +RH+WGLR
Sbjct: 112 YSQWLCLRHHWGLR 125
>UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4;
Methanococcus|Rep: 30S ribosomal protein S13P -
Methanococcus maripaludis
Length = 149
Score = 98.7 bits (235), Expect = 7e-20
Identities = 43/127 (33%), Positives = 79/127 (62%)
Frame = +1
Query: 49 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKI 228
+F+H +RI T+++GK + +A+ +KG+G + V++ ++D ++AG +E+V KI
Sbjct: 5 EFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKI 64
Query: 229 ITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 408
+++ +P + IP W NR+KD+ G L ++L ++ED+ +KKIR ++G+RH
Sbjct: 65 ESVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRHEL 124
Query: 409 GLRVRGQ 429
L RGQ
Sbjct: 125 RLPCRGQ 131
>UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S13P -
Cenarchaeum symbiosum
Length = 227
Score = 95.1 bits (226), Expect = 9e-19
Identities = 41/127 (32%), Positives = 78/127 (61%)
Frame = +1
Query: 49 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKI 228
+++HI+RI+ ++ G++K + + I+G+G ++ +L ID + G T+E+V I
Sbjct: 50 EYKHIVRILGNDLPGEKKAVVGLRQIRGIGYGFATAILDVLKIDNNSNIGYLTDEQVASI 109
Query: 229 ITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 408
++ +P P WFLNR+KD+ G+ + +S+++ +R D+ER + + +G RH +
Sbjct: 110 EKLLQDPAGAGFPTWFLNRRKDLETGEDRHIFTSDIEFTVRNDVERERVSGSWKGYRHMF 169
Query: 409 GLRVRGQ 429
GL+VRGQ
Sbjct: 170 GLKVRGQ 176
>UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiella
natans|Rep: Ribosomal protein S18 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 159
Score = 92.3 bits (219), Expect = 6e-18
Identities = 43/129 (33%), Positives = 74/129 (57%)
Frame = +1
Query: 46 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEK 225
+K +RI + NI+G F + IKGVG+R SN++ K D++ + + ++E+
Sbjct: 13 EKSMTFIRIFDCNINGSLSCNFGLRNIKGVGIRMSNVLRKILKKDINYKLYNIEKADLEE 72
Query: 226 IITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 405
++ I + P W +NR+ D + G + S+ LDS L+ED++RL I+ ++G+RH
Sbjct: 73 VVNIFGKSSRKAFPSWLMNRRADFLTGDNLHVLSTVLDSALQEDIKRLVTIKNNKGLRHL 132
Query: 406 WGLRVRGQH 432
L+ RGQH
Sbjct: 133 SRLKTRGQH 141
>UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 177
Score = 91.1 bits (216), Expect = 1e-17
Identities = 42/128 (32%), Positives = 77/128 (60%)
Frame = +1
Query: 46 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEK 225
+ ++ +RI T++DG + V A+T + G+G R + I+ +KAD+D G+ ++ +E+
Sbjct: 18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIER 77
Query: 226 IITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 405
++ + N +P+W N QKD G+ + T ++L R+D+ R+K I ++RG+RH
Sbjct: 78 VVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHK 136
Query: 406 WGLRVRGQ 429
G +VRGQ
Sbjct: 137 RGQKVRGQ 144
>UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p -
Drosophila melanogaster (Fruit fly)
Length = 246
Score = 89.4 bits (212), Expect = 5e-17
Identities = 39/48 (81%), Positives = 45/48 (93%)
Frame = +1
Query: 124 IKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIP 267
IKGVG RYSNIVLKKAD+DL KRAGECTEEEV+K++TI+SNP QYK+P
Sbjct: 1 IKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVP 48
>UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza
sativa (japonica cultivar-group)|Rep: Ribosomal protein
S18-like - Oryza sativa subsp. japonica (Rice)
Length = 145
Score = 85.0 bits (201), Expect = 1e-15
Identities = 36/50 (72%), Positives = 44/50 (88%)
Frame = +1
Query: 283 RQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 432
++KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 79 QKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 128
>UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2;
Thermoproteaceae|Rep: 30S ribosomal protein S13P -
Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)
Length = 152
Score = 83.8 bits (198), Expect = 2e-15
Identities = 41/123 (33%), Positives = 73/123 (59%)
Frame = +1
Query: 61 ILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKIITIM 240
I+R+ +T+++G ++V +A+ I+G+G+ + + K ID G EE++ K+ +
Sbjct: 8 IVRVGDTDLEGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAVLGALPEEQINKLDWAV 67
Query: 241 SNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 420
N + P WFLNR+KD G+ L S L + D++ +KK+++ +G+RH GL+V
Sbjct: 68 RNLHEVA-PAWFLNRRKDPETGRDMHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLGLKV 126
Query: 421 RGQ 429
RGQ
Sbjct: 127 RGQ 129
>UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1;
uncultured euryarchaeote ARMAN-2|Rep: SSU ribosomal
protein S13AB - uncultured euryarchaeote ARMAN-2
Length = 177
Score = 81.0 bits (191), Expect = 2e-14
Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 4/132 (3%)
Frame = +1
Query: 49 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSN----IVLKKADIDLDKRAGECTEEE 216
K I+RI N +I+G + A+ +KG+G S+ ++ K +ID G E +
Sbjct: 15 KAMSIVRIANKDINGGLNIQRALDQVKGIGQTMSHSLSYVIEHKFNIDPSTPIGSLNESQ 74
Query: 217 VEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGM 396
V ++ ++ +P +Y +P + LNR+ D+ GK L ++L +R+ + R +R RG
Sbjct: 75 VTQVEELIKDPHKYGVPKYLLNRRNDMDTGKDMHLIGNDLIFAVRQSINRDVTLRVWRGY 134
Query: 397 RHYWGLRVRGQH 432
RH +G +VRGQH
Sbjct: 135 RHQYGQKVRGQH 146
>UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S13P -
Nanoarchaeum equitans
Length = 153
Score = 79.0 bits (186), Expect = 6e-14
Identities = 39/123 (31%), Positives = 67/123 (54%)
Frame = +1
Query: 61 ILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKIITIM 240
I+ I + ++DG + + + + GV +++ V ID ++ G ++EE+EK+ +
Sbjct: 13 IVHIADVDLDGHKPIYVELRKVVGVNWMFAHAVCAALGIDKWRKIGSLSDEELEKLEDAL 72
Query: 241 SNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 420
NP +Y IP W NR++D GK L ++ + D++R +I + RG RH GL V
Sbjct: 73 RNPWKYGIPSWLYNRRRDPETGKDLHLVGNDYKITMEFDIKREMQINSWRGYRHREGLPV 132
Query: 421 RGQ 429
RGQ
Sbjct: 133 RGQ 135
>UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 14 contig 1, DNA
sequence - Ostreococcus tauri
Length = 272
Score = 75.4 bits (177), Expect = 8e-13
Identities = 42/135 (31%), Positives = 70/135 (51%)
Frame = -3
Query: 432 VLTTHTKAPVMSHPSVSANLLEPLQIFTEF*IQVGGGQLAVFTINNILLPI*EPVWYLIL 253
VLTT T APV+S SV +NLL+ L++ + +++ G L I I+L + EP+ L
Sbjct: 44 VLTTDTDAPVVSQTSVVSNLLQTLEVVAQLRVELVGHHLRELAILEIVLAVQEPIRNSEL 103
Query: 252 PRIRHDSDNFFNLFFCAFASTLVKINVGFFENNVGVPQANTFDSRHRKHNLAFAIDVRIH 73
R+ HD F L L +I++ F + VG A+ D H+L ++V +
Sbjct: 104 SRVGHDHHQRFQLRGGELPGALPEIDLSLFAHQVGEAAADPLDLGQGVHHLLTTVNVGVE 163
Query: 72 DTKNMLKFVWNDQRH 28
D ++L+ + +D+ H
Sbjct: 164 DADDVLEIITDDEAH 178
>UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory
specific medium-chain acyl CoA synthetase; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
olfactory specific medium-chain acyl CoA synthetase -
Ornithorhynchus anatinus
Length = 176
Score = 60.5 bits (140), Expect = 2e-08
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +1
Query: 238 MSNPRQYKIPDWFLNRQKDIVDGKYSQL 321
M NPRQYKIPDWFLNRQKD+ DGKYSQ+
Sbjct: 1 MQNPRQYKIPDWFLNRQKDVKDGKYSQV 28
>UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14;
Bacteria|Rep: 30S ribosomal protein S13 - Thermotoga
maritima
Length = 125
Score = 55.2 bits (127), Expect = 9e-07
Identities = 43/121 (35%), Positives = 63/121 (52%)
Frame = +1
Query: 67 RIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 246
RI+ + +KV A+T I G+G S +LK ID +KR G+ T+EE+ KI
Sbjct: 3 RIVGVELPNNKKVWVALTYIYGIGRSRSFEILKNTGIDPEKRVGDLTDEEISKI------ 56
Query: 247 PRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 426
+Y I D F V+G+ L S++ ++ RL +I +RG+RH GL VRG
Sbjct: 57 -TKY-IQDHFK------VEGE--------LRSEVERNIRRLIEIGCYRGIRHKLGLPVRG 100
Query: 427 Q 429
Q
Sbjct: 101 Q 101
>UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr7 scaffold_31, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 48
Score = 48.8 bits (111), Expect = 8e-05
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +3
Query: 18 LNQNVAGHSRQISTYSSYHEYEHRWQTQGYVCDDGYQRCWP 140
L+ +V G R IST++S ++E RW+T+ +VC D +QR WP
Sbjct: 5 LSMSVLGSERGISTHTSCAQHERRWETEDHVCSDLHQRYWP 45
>UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycoplasma
hyopneumoniae|Rep: 30S ribosomal protein S13 -
Mycoplasma hyopneumoniae (strain 232)
Length = 137
Score = 46.4 bits (105), Expect = 4e-04
Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Frame = +1
Query: 67 RIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMS- 243
R++N I ++++ A+ +I G+G K ++ ++ + EE+ K I++
Sbjct: 3 RVLNVEIPNHKRIVIALCSIFGIG--------KSLATEIVEKTAKLQEEKFGKKFPILTE 54
Query: 244 NPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVR 423
N + +I + L +D+ + T +L +++ +++RL +I+ +RG+RH GL VR
Sbjct: 55 NTKVKEINEEVLQVIRDVAK---TYKTEGDLHREVQSNIKRLIEIKCYRGIRHRKGLPVR 111
Query: 424 GQ 429
GQ
Sbjct: 112 GQ 113
>UniRef50_A6PT06 Cluster: Ribosomal protein S13; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S13 -
Victivallis vadensis ATCC BAA-548
Length = 131
Score = 45.6 bits (103), Expect = 7e-04
Identities = 35/121 (28%), Positives = 59/121 (48%)
Frame = +1
Query: 67 RIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 246
RI+ +I G ++V F++ + GVG + +++K ID D +A + T +++ I I+
Sbjct: 3 RIIGVDIPGNKRVEFSLRYLYGVGPAKALEIIQKVGIDPDLKAKDLTPDQIGAITKIL-- 60
Query: 247 PRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 426
Q D+ L +L L D+ RL++I +RG+RH L VRG
Sbjct: 61 -------------QDDL-------LVEGDLRRTLAADIRRLQQINCYRGIRHRRSLPVRG 100
Query: 427 Q 429
Q
Sbjct: 101 Q 101
>UniRef50_Q7QRY8 Cluster: GLP_549_7513_8304; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_7513_8304 - Giardia lamblia ATCC
50803
Length = 263
Score = 45.6 bits (103), Expect = 7e-04
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 4/139 (2%)
Frame = -3
Query: 432 VLTTHTKAPVMSHPSVSANLLEPLQIFTEF*IQVGGG---QLAVFTINNILLPI*EPVWY 262
VL + + V++ +++A+ E LQ+ T + G G + VF I++ I P W
Sbjct: 29 VLPANLQVVVVADTALAASFTETLQVRT---VGRGYGIDQNVHVFARFKIIVTIKHPGWN 85
Query: 261 LILPRIRHDSDNFFNLFFCAFASTLVKINVGFFENNVGVPQANTFDSRHRKHNLAFAIDV 82
+ + D L C S V +NVGF E N+G N +S A+DV
Sbjct: 86 AVGEGVLKDLHESILLGRCELTSAFVNVNVGFLEGNIGKAAPNPLNSDKGTLKYDLALDV 145
Query: 81 RIHDTKNMLKFV-WNDQRH 28
+ T+ + V ND+ H
Sbjct: 146 CVKHTQEVPVVVGLNDRCH 164
>UniRef50_O66486 Cluster: 30S ribosomal protein S13; n=28; cellular
organisms|Rep: 30S ribosomal protein S13 - Aquifex
aeolicus
Length = 126
Score = 42.3 bits (95), Expect = 0.007
Identities = 32/121 (26%), Positives = 56/121 (46%)
Frame = +1
Query: 67 RIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 246
RI ++ +++ A+T I G+G + + +K I KR GE T +E
Sbjct: 3 RIAGVDLPNNKRLEVALTYIYGIGWSRAREICEKTGIPCTKRVGELTPDE---------- 52
Query: 247 PRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 426
LN + +D Y +L +++ ++++LK + +RG+RH GL VRG
Sbjct: 53 ----------LNTLRKFIDENYK--VEGDLRREVQLNIKKLKDMGCYRGIRHARGLPVRG 100
Query: 427 Q 429
Q
Sbjct: 101 Q 101
>UniRef50_Q6G2Y7 Cluster: 30S ribosomal protein S13; n=20; cellular
organisms|Rep: 30S ribosomal protein S13 - Bartonella
henselae (Rochalimaea henselae)
Length = 122
Score = 40.7 bits (91), Expect = 0.021
Identities = 31/121 (25%), Positives = 57/121 (47%)
Frame = +1
Query: 67 RIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 246
RI NI ++V+ A+ I G+G +++ + KK I + +R E ++ EV +I
Sbjct: 3 RIAGVNIPTNKRVIIALQYIHGIGPKFAQEITKKVGIPIGRRVHELSDAEVLQI------ 56
Query: 247 PRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 426
++ +D Y +L ++ +++RL + +RG+RH L VRG
Sbjct: 57 --------------REAIDQGYQ--VEGDLRREVAMNVKRLMDLGCYRGLRHRRSLPVRG 100
Query: 427 Q 429
Q
Sbjct: 101 Q 101
>UniRef50_Q5NQ42 Cluster: 30S ribosomal protein S13; n=107; cellular
organisms|Rep: 30S ribosomal protein S13 - Zymomonas
mobilis
Length = 122
Score = 39.5 bits (88), Expect = 0.048
Identities = 31/121 (25%), Positives = 57/121 (47%)
Frame = +1
Query: 67 RIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 246
RI NI ++V A+T I G+G + ++ K I ++R + ++ EV +I
Sbjct: 3 RIAGVNIPTNKRVEIALTYIHGIGPTTAKKIVTKLGIAPERRVQDLSDNEVLQI------ 56
Query: 247 PRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 426
++ +D Y+ +L ++ +++RL + +RG+RH GL VRG
Sbjct: 57 --------------REAIDADYT--VEGDLRRQVAMNIKRLMDLACYRGLRHRKGLPVRG 100
Query: 427 Q 429
Q
Sbjct: 101 Q 101
>UniRef50_A0CSW0 Cluster: Chromosome undetermined scaffold_26, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_26,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 367
Score = 37.1 bits (82), Expect = 0.26
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +1
Query: 145 YSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDG 306
Y N + D + DK + E ++E E++IT++ + KI DW +KD+ DG
Sbjct: 93 YQNAIDSAQD-EKDKYSRETLQKEKEELITLICEMKHSKIEDWLKTIKKDLPDG 145
>UniRef50_A6RYD3 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 82
Score = 35.9 bits (79), Expect = 0.59
Identities = 14/35 (40%), Positives = 26/35 (74%)
Frame = +1
Query: 328 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 432
+ L +L++++ER++ + ++RG RH GL VRGQ+
Sbjct: 5 TELKRRLQDNIERMRTMGSYRGRRHAMGLPVRGQN 39
>UniRef50_Q6UVP6 Cluster: Ribosomal protein S13; n=1;
Pseudendoclonium akinetum|Rep: Ribosomal protein S13 -
Pseudendoclonium akinetum (Green alga)
Length = 119
Score = 28.3 bits (60), Expect(2) = 0.65
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 286 QKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 429
Q +++ +L +SN + E ++ L KI +RG RH L RGQ
Sbjct: 51 QLELLTKSCRRLIASNKKREKVEAIKSLIKISCYRGTRHMNALPCRGQ 98
Score = 26.6 bits (56), Expect(2) = 0.65
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +1
Query: 70 IMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVE 222
++ +N+ + FA+ AI GVG + + V I+ R E ++E
Sbjct: 3 LLGSNVSENKAAFFALQAIYGVGQKSAAAVCNLVGINPQTRLRELNSTQLE 53
>UniRef50_P46747 Cluster: Mitochondrial ribosomal protein S13; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S13 - Prototheca wickerhamii
Length = 119
Score = 35.5 bits (78), Expect = 0.78
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 322 TSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 429
T S++ R++++RL I ++RG RH GL VRGQ
Sbjct: 66 TGSDVRRFTRQNIQRLVNIHSYRGYRHIQGLPVRGQ 101
>UniRef50_Q4WP11 Cluster: 40S ribosomal protein S13; n=5;
Eurotiomycetidae|Rep: 40S ribosomal protein S13 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 169
Score = 34.7 bits (76), Expect = 1.4
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +1
Query: 328 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 429
++L ++ +D++RLK+ ++RG RH GL VRGQ
Sbjct: 103 NDLRRQILDDIKRLKESGSYRGRRHALGLPVRGQ 136
>UniRef50_A1CXK9 Cluster: 40S ribosomal protein S13; n=7;
Pezizomycotina|Rep: 40S ribosomal protein S13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 118
Score = 34.7 bits (76), Expect = 1.4
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +1
Query: 328 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 429
++L ++ +D++RLK+ ++RG RH GL VRGQ
Sbjct: 66 NDLRRQILDDIKRLKESGSYRGRRHALGLPVRGQ 99
>UniRef50_Q8FS35 Cluster: 30S ribosomal protein S13; n=42;
Bacteria|Rep: 30S ribosomal protein S13 -
Corynebacterium efficiens
Length = 122
Score = 34.7 bits (76), Expect = 1.4
Identities = 25/121 (20%), Positives = 57/121 (47%)
Frame = +1
Query: 67 RIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 246
R+ ++ +++ A+T I G+G + +L++ + D R T+E++ +
Sbjct: 3 RLAGVDLPRNKRMEIALTYIYGIGPARAKQLLEETGVSPDLRTDNLTDEQIASL------ 56
Query: 247 PRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 426
+D+++ + +L +++ D+ R +I +++G+RH GL VRG
Sbjct: 57 --------------RDVIEATWK--VEGDLRREVQADIRRKIEIGSYQGLRHRRGLPVRG 100
Query: 427 Q 429
Q
Sbjct: 101 Q 101
>UniRef50_Q9TCB7 Cluster: Ribosomal protein S13; n=1; Nephroselmis
olivacea|Rep: Ribosomal protein S13 - Nephroselmis
olivacea
Length = 125
Score = 34.3 bits (75), Expect = 1.8
Identities = 29/120 (24%), Positives = 52/120 (43%)
Frame = +1
Query: 70 IMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNP 249
I NT + K+KV A+ I G+G + + + + + + + +VE++ ++S
Sbjct: 4 IANTYLSQKQKVSIALQQIYGIGSHLAYQICDQLGLSPNFKIEQLNRNQVEQLSLLVSQ- 62
Query: 250 RQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 429
S +T S L +++D+ RL I +RG R+ L VRGQ
Sbjct: 63 ---------------------SYVTGSKLKRTIQQDMSRLISISCYRGFRYIQKLPVRGQ 101
>UniRef50_Q0QIP8 Cluster: Ribosomal protein S13; n=1;
Oltmannsiellopsis viridis|Rep: Ribosomal protein S13 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 117
Score = 34.3 bits (75), Expect = 1.8
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +1
Query: 343 KLREDLERLKKIRAHRGMRHYWGLRVRGQ 429
K RE+++RL +I ++RG RH GL RGQ
Sbjct: 72 KKRENIQRLVRISSYRGFRHTAGLPCRGQ 100
>UniRef50_Q5B4R2 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 130
Score = 34.3 bits (75), Expect = 1.8
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +1
Query: 328 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 429
++L ++ +D++RLK+ +RG RH GL VRGQ
Sbjct: 65 NDLRRQVLDDIKRLKETGTYRGRRHALGLPVRGQ 98
>UniRef50_A6LHC7 Cluster: Putative outer membrane protein, probably
involved in nutrient binding; n=1; Parabacteroides
distasonis ATCC 8503|Rep: Putative outer membrane
protein, probably involved in nutrient binding -
Parabacteroides distasonis (strain ATCC 8503 / DSM 20701
/ NCTC11152)
Length = 531
Score = 33.9 bits (74), Expect = 2.4
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 133 VGLRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDW 273
V RYS ++ KA+ + K G+ T+E V+ I ++ R +K DW
Sbjct: 407 VMFRYSEVIYNKAEALMRKNGGKATQEVVDMINSV--RQRSFKAEDW 451
>UniRef50_O21258 Cluster: Ribosomal protein S13; n=1; Reclinomonas
americana|Rep: Ribosomal protein S13 - Reclinomonas
americana
Length = 122
Score = 33.9 bits (74), Expect = 2.4
Identities = 28/123 (22%), Positives = 56/123 (45%)
Frame = +1
Query: 61 ILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKIITIM 240
++ + NI+ +K+ FA+ AI G+G + + + ++ + + E ++ K+
Sbjct: 1 MIHLFGININSNKKIPFALKAIYGLGNKKVDELCSYMGLNPKLKMSDLNESQISKLC--- 57
Query: 241 SNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 420
+ I + FL S L +++RL I+++RG+RH +GL V
Sbjct: 58 -----HYIEENFL--------------IESELRKNQTYNIKRLLDIKSYRGLRHAYGLPV 98
Query: 421 RGQ 429
GQ
Sbjct: 99 HGQ 101
>UniRef50_O59772 Cluster: Mitochondrial ribosomal protein subunit
S37; n=1; Schizosaccharomyces pombe|Rep: Mitochondrial
ribosomal protein subunit S37 - Schizosaccharomyces
pombe (Fission yeast)
Length = 151
Score = 33.9 bits (74), Expect = 2.4
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 355 DLERLKKIRAHRGMRHYWGLRVRGQH 432
D+ RL IR +RGMRH GL V GQ+
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQN 101
>UniRef50_Q98JF7 Cluster: Mll1963 protein; n=1; Mesorhizobium
loti|Rep: Mll1963 protein - Rhizobium loti
(Mesorhizobium loti)
Length = 315
Score = 33.5 bits (73), Expect = 3.1
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 204 AFASTLVKINVGFFENNVG-VPQANTFDSRHRK-HNLAFAIDVRIHDTKNML 55
AFA T V+ VGF++ VG + +D +K H+ AF DV + DTK L
Sbjct: 23 AFAETPVEPTVGFYKYTVGDIEVTAIYDGIWKKPHDPAFIKDVSVEDTKAAL 74
>UniRef50_Q5CLQ5 Cluster: COG1752: esterase of the alpha-beta
hydrolase superfamily; n=2; Cryptosporidium|Rep:
COG1752: esterase of the alpha-beta hydrolase
superfamily - Cryptosporidium hominis
Length = 794
Score = 33.1 bits (72), Expect = 4.2
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Frame = +1
Query: 46 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEK 225
+ F +L+ +N +I K + + + SN K DK+ + E
Sbjct: 645 NSFVVVLKSLNDDIQRLNKTLITIDSFLKSSNNISNKATKLLKYIEDKQKKGIFSAKFED 704
Query: 226 IITIMSNPRQYK-----IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKI 378
+IT++S Y I +N ++ IVD K+SQL + + LRE E K+
Sbjct: 705 VITLLSLYEDYVEKLQGIRIKEINSRRIIVDSKHSQLILARIIIALREQNEHFPKL 760
>UniRef50_Q6CFI9 Cluster: Yarrowia lipolytica chromosome B of strain
CLIB122 of Yarrowia lipolytica; n=2;
Saccharomycetales|Rep: Yarrowia lipolytica chromosome B
of strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 156
Score = 33.1 bits (72), Expect = 4.2
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 328 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 429
S+L K+ D+ER +K ++ G RH G+ V+GQ
Sbjct: 70 SDLAKKINADIERKRKTGSYVGRRHVMGMPVKGQ 103
>UniRef50_Q2AKW7 Cluster: Ribosomal protein S13; n=1; Bacillus
weihenstephanensis KBAB4|Rep: Ribosomal protein S13 -
Bacillus weihenstephanensis KBAB4
Length = 75
Score = 32.7 bits (71), Expect = 5.5
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Frame = +1
Query: 217 VEKIITIMSNPRQYKIPDWF---LNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 387
++K++ + PR+++ D L R +DI+D +L ++ +++RL +I ++
Sbjct: 6 LKKLLQKLVFPRKHESRDLSEDELGRIRDIID---RIKVEGDLRREVSLNIKRLMEIGSY 62
Query: 388 RGMRHYWGLRVRG 426
RG+RH GL VRG
Sbjct: 63 RGLRHRRGLPVRG 75
>UniRef50_Q026Q4 Cluster: Trigger factor; n=1; Solibacter usitatus
Ellin6076|Rep: Trigger factor - Solibacter usitatus
(strain Ellin6076)
Length = 422
Score = 32.7 bits (71), Expect = 5.5
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +1
Query: 187 KRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQ-KDIVDGKYSQLTSSNLD-SKLREDL 360
+R E +E KI+ + + ++ +P+ F+ RQ ++ V+ + +D SKL+ D
Sbjct: 272 QRQYEAQQEAKNKIVDKLVDAHEFPVPEVFVERQIRNRVEQSLRAMAEQGVDPSKLKLDW 331
Query: 361 ERLKKIRAHRGMR 399
E++K+ + + R
Sbjct: 332 EKVKEAQREKATR 344
>UniRef50_A6Q707 Cluster: Periplasmic nitrate reductase component
NapD; n=1; Sulfurovum sp. NBC37-1|Rep: Periplasmic
nitrate reductase component NapD - Sulfurovum sp.
(strain NBC37-1)
Length = 119
Score = 32.7 bits (71), Expect = 5.5
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 196 GECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSN-LDSKLREDLERLK 372
G+ EEE+EK++ I P D + Q+D +D + +L N + L +D ++
Sbjct: 46 GKGVEEEIEKLVKIQRLPNVI-AADMMMTYQEDELDAEVKRLEEENPVPDVLNDDDIDVR 104
Query: 373 KIRAHRGMRH 402
+ H +RH
Sbjct: 105 DVEYHGDLRH 114
>UniRef50_A0NKF0 Cluster: Rhamnosyltransferase; n=1; Oenococcus oeni
ATCC BAA-1163|Rep: Rhamnosyltransferase - Oenococcus
oeni ATCC BAA-1163
Length = 311
Score = 32.7 bits (71), Expect = 5.5
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 55 QHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKIIT 234
QH ++ T + K +F + I Y N + KK +L K GEC +E I
Sbjct: 215 QHSSNVVGTTGNNLFKKIFKIREI--FNKFYKNGLFKKQANELLKNYGECLSKEKRNAIN 272
Query: 235 I-MSNPRQYKIPDWFLNRQK 291
I +S+ RQ K W L + K
Sbjct: 273 IFLSSNRQLKEVFWILKKIK 292
>UniRef50_Q8W9S0 Cluster: Ribosomal protein S13; n=1; Mesostigma
viride|Rep: Ribosomal protein S13 - Mesostigma viride
Length = 116
Score = 32.7 bits (71), Expect = 5.5
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 334 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 429
L +++ + ERL KI ++RG RH+ GL RGQ
Sbjct: 72 LINRIHLNKERLIKISSYRGFRHHRGLPARGQ 103
>UniRef50_Q7PY55 Cluster: ENSANGP00000013280; n=4;
Endopterygota|Rep: ENSANGP00000013280 - Anopheles
gambiae str. PEST
Length = 183
Score = 32.7 bits (71), Expect = 5.5
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +1
Query: 85 IDGKRKVMFAMTAIKGVGLRYSNIVLK---KADI-DLDKRAGECTEEEVEK 225
+D K KV A G+G +S +LK K I DLD AGE T EE+EK
Sbjct: 1 MDLKNKVALVTGAATGLGRAFSEELLKHGAKVVICDLDSDAGELTVEELEK 51
>UniRef50_Q24DA0 Cluster: Putative uncharacterized protein; n=3;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 579
Score = 32.7 bits (71), Expect = 5.5
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +1
Query: 49 KFQHILRIMNTNID----GKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEE 216
K Q ++ I+N + D GK+++ + + + Y ++ K +DL+++ + EE+
Sbjct: 282 KIQDLINILNIDKDVFQQGKKQIQIGLEKLSQDQIEYIETLVNKI-VDLNEQYQQLKEED 340
Query: 217 VEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLT 324
II+ P Y I + K + K +T
Sbjct: 341 NNMIISSKLQPSSYLIYNQIFKLDKKLTKQKLESIT 376
>UniRef50_A0DZU7 Cluster: Chromosome undetermined scaffold_70, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_70,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 713
Score = 32.7 bits (71), Expect = 5.5
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 139 LRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQK 291
+ Y + +K ++D K C ++E+EK + SNP + W + +K
Sbjct: 531 VEYMKVQGQKNELDFHKLINSCLDKEIEKNLKNFSNPATIDLYPWMIKYRK 581
>UniRef50_A1L3M1 Cluster: LOC100037042 protein; n=1; Xenopus
laevis|Rep: LOC100037042 protein - Xenopus laevis
(African clawed frog)
Length = 384
Score = 32.3 bits (70), Expect = 7.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 229 ITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 372
+ I ++ KIPD LN + V +S+ + N +S+L+ D +R+K
Sbjct: 6 VGIHKEEQEQKIPDPLLNGDAEDVPQHFSETPTCNTESRLQADQQRIK 53
>UniRef50_Q6A6Q8 Cluster: 30S ribosomal protein S13; n=32; cellular
organisms|Rep: 30S ribosomal protein S13 -
Propionibacterium acnes
Length = 123
Score = 32.3 bits (70), Expect = 7.3
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = +1
Query: 196 GECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKK 375
G E K I + R +++ D L +D ++ Y +L ++ D+ R +
Sbjct: 26 GRTRATETLKATGISGDLRVHELTDDQLVALRDHIEANYH--VEGDLRREVAADIRRKIE 83
Query: 376 IRAHRGMRHYWGLRVRGQ 429
I ++G RH GL VRGQ
Sbjct: 84 IGTYQGRRHRSGLPVRGQ 101
>UniRef50_P42732 Cluster: 30S ribosomal protein S13, chloroplast
precursor; n=6; cellular organisms|Rep: 30S ribosomal
protein S13, chloroplast precursor - Arabidopsis
thaliana (Mouse-ear cress)
Length = 169
Score = 32.3 bits (70), Expect = 7.3
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +1
Query: 358 LERLKKIRAHRGMRHYWGLRVRGQ 429
++RLK+I+ +RG+RH GL RGQ
Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQ 145
>UniRef50_Q8ZXT5 Cluster: Reverse gyrase [Includes: Helicase (EC
3.6.1.-); Topoisomerase (EC 5.99.1.3)]; n=4;
Pyrobaculum|Rep: Reverse gyrase [Includes: Helicase (EC
3.6.1.-); Topoisomerase (EC 5.99.1.3)] - Pyrobaculum
aerophilum
Length = 1228
Score = 29.9 bits (64), Expect(2) = 7.5
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 25 KMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIV--LKKADIDLDKRAG 198
K V D ILR + NID +++ A+ L N+ L+KA++ D +
Sbjct: 204 KFDFVAADDVDSILRATSKNIDRILRLLGVSDAVLNTALEVINLTKQLRKAEVAGDLKEV 263
Query: 199 ECTEEEVEKI 228
E ++E+ K+
Sbjct: 264 ERLDQEMAKL 273
Score = 21.0 bits (42), Expect(2) = 7.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 328 SNLDSKLREDLERLK 372
+ L +KLRE+++RLK
Sbjct: 271 AKLRAKLREEVQRLK 285
>UniRef50_Q4RUT5 Cluster: Chromosome 12 SCAF14993, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 12 SCAF14993, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 1439
Score = 31.9 bits (69), Expect = 9.6
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -1
Query: 173 SAFLRTMLEYLRPTPLIAVIANITLRLPSMFVFMIRRIC*NLSGMTSDILVKFLTTF 3
S LRT+LE R PLI+ N PS VF+ + + +L ++D++ LT F
Sbjct: 550 SRVLRTILEQRRLCPLISPFFNPN-AAPSQLVFLYQDVVTSLDLSSADVVFMLLTKF 605
>UniRef50_A3IUX9 Cluster: Putative uncharacterized protein; n=1;
Cyanothece sp. CCY 0110|Rep: Putative uncharacterized
protein - Cyanothece sp. CCY 0110
Length = 227
Score = 31.9 bits (69), Expect = 9.6
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 265 PDWFLNRQK--DIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 429
P W +++ ++ + + L D+ L DL+ K + A G+R YW + VRG+
Sbjct: 109 PTWEAGQRRYINLAEVRVPDLVGEVGDTTLATDLDEKKHLYAKLGIREYWVIDVRGK 165
>UniRef50_A7S3C9 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 270
Score = 31.9 bits (69), Expect = 9.6
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 199 ECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTS--SNLDSKLREDLERLK 372
E TE V K + I N + Y+ DW LN V+G + D KL LER K
Sbjct: 31 ELTETPVRKAMFIQVN-QTYEETDWILNLPD--VNGTLEGIVGWVDLQDPKLESILERYK 87
Query: 373 KIRAHRGMRH 402
K RG+R+
Sbjct: 88 KFPKFRGVRN 97
>UniRef50_P15758 Cluster: Mitochondrial ribosomal protein S13; n=4;
Magnoliophyta|Rep: Mitochondrial ribosomal protein S13 -
Oenothera bertiana (Bertero's evening primrose)
Length = 114
Score = 31.9 bits (69), Expect = 9.6
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 349 REDLERLKKIRAHRGMRHYWGLRVRGQ 429
R D+ER I +RG+RH GL +RGQ
Sbjct: 73 RADIERFISISCYRGIRHQDGLPLRGQ 99
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 482,280,735
Number of Sequences: 1657284
Number of extensions: 9494956
Number of successful extensions: 29003
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 28269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28987
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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