Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0333
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical p...   219   1e-57
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    31   0.69 
U50069-7|AAB37561.1|  913|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U00058-5|AAA50730.1|  309|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U50301-9|AAB37047.1|  305|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical
           protein Y57G11C.16 protein.
          Length = 154

 Score =  219 bits (535), Expect = 1e-57
 Identities = 97/135 (71%), Positives = 118/135 (87%)
 Frame = +1

Query: 28  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECT 207
           MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVG R++ +  +KAD+D++KRAGE T
Sbjct: 1   MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60

Query: 208 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 387
           EE+ +KI+TIM NP QYKIP+WFLNRQKDI DGK  QL S+ +D+KLREDLER+KKIR H
Sbjct: 61  EEDFDKIVTIMQNPSQYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLH 120

Query: 388 RGMRHYWGLRVRGQH 432
           RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 350 VKIWRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVYQRRS 484
           +K +R   + AL     +TGA + + +TL LLA    LL  QR S
Sbjct: 137 IKKYRWGMKMALLFHLCVTGALLSITNTLHLLASGYHLLKRQRNS 181


>U50069-7|AAB37561.1|  913|Caenorhabditis elegans Hypothetical
           protein C09B9.7 protein.
          Length = 913

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +1

Query: 232 TIMSNPRQYKIPDWFLNRQK-DIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 408
           +I  NP    + +  LNR      D KY    SS+++  ++ DLE+LKKI   + ++ Y 
Sbjct: 111 SIRDNPVSQSLANILLNRDTAPYYDYKY---LSSDIELMVK-DLEKLKKINKEKTLKMY- 165

Query: 409 GLRVRG 426
           GL   G
Sbjct: 166 GLLAHG 171


>U00058-5|AAA50730.1|  309|Caenorhabditis elegans Hypothetical
           protein W03A5.4 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +1

Query: 76  NTNIDGKRKVMFAMTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQ 255
           N N D K+ +  ++ A    G+  S+    K +ID+ K   +  EEE     +  SN  +
Sbjct: 60  NGNDDEKKDLKISIDAESDSGISGSSPASSKKNIDISKEEPKQDEEEEVTTTSTPSNGHE 119

Query: 256 YKI 264
           +++
Sbjct: 120 FQL 122


>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +1

Query: 244 NPRQYKIPDWFLNRQKDIVDGKYS-QLTSSNLDSKLREDL 360
           NP  YK+ D++ N+  +++  K + +L S++L  K +++L
Sbjct: 40  NPSFYKMVDFYFNKGAEVIAPKLAEELKSNSLSQKDKKNL 79


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
            C13F10.4 protein.
          Length = 2076

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 111  CDDGYQRCWPEVLQHCS 161
            C + YQ CWP +L  CS
Sbjct: 1512 CREYYQICWPPILLACS 1528


>U50301-9|AAB37047.1|  305|Caenorhabditis elegans Hypothetical
           protein F20D6.2 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 115 MTAIKGVGLRYSNIVLKKADIDLDKRAGECTEEEVEKIIT 234
           + AI G  L        + ++DL  R+ EC +E +E ++T
Sbjct: 12  LLAIFGANLLLKRTFDSRDNVDLLHRSAECVQETIEPLMT 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,133,410
Number of Sequences: 27780
Number of extensions: 230790
Number of successful extensions: 788
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)