Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0331
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   4.5  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   4.5  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    26   6.0  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 404  ELWLEDPTITGISGYYSLWDIS 339
            E W  DPTI  I G  ++W ++
Sbjct: 1470 EFWKRDPTIAPIRGALAVWGLT 1491


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 154 HLSD*DPILFLSYCSKRGKNIHDRYWSWSPVCSTHSMSNFKHN*ENIRINLKKF 315
           H +D D I  L    K     +   + W+P       S+FK + E IR  LK F
Sbjct: 622 HSADDDAITVLQETKKAVDIGYWPLYRWTPALEDGEYSDFKLDSERIRRELKTF 675


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 651 SFVIVRTQLSLCLVDDLNNFRYIRLKLSFQSRRVYMKYMV-LNKTFGMLLQDFIY 490
           S ++    ++ CL   L+N+R+ + KL   +  V++  ++ L   FG L+   +Y
Sbjct: 528 SIILGVIHMTFCLFLSLSNYRFFKRKLDIYA--VFVPSLIFLEAIFGYLVITIVY 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,808
Number of Sequences: 5004
Number of extensions: 48113
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)