Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0331
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    32   0.46 
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    32   0.46 
AC024814-2|AAK68521.2|  259|Caenorhabditis elegans Hypothetical ...    28   7.4  
U41106-3|AAA82411.1|  261|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
           protein C30G12.6a protein.
          Length = 1100

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = -3

Query: 645 VIVRTQLSLCLVDDLNNFRYIRLKLSFQSRRVYMKYMVLNKTFGMLLQDFI--YFSANVN 472
           +  R  +S C VD + NF   RL  +    R    ++    TF   L+ F   YF  N++
Sbjct: 514 IFSRIFISRCFVDVIFNFAKGRLDATHLRSRALTFFLPDVTTFVEHLEKFCDAYFHRNMS 573

Query: 471 FDLLCECSACVNELHLVLV 415
            D  C+     N LHL+ V
Sbjct: 574 TDYTCKDLVLYNLLHLMNV 592


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
           protein C30G12.6b protein.
          Length = 1097

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = -3

Query: 645 VIVRTQLSLCLVDDLNNFRYIRLKLSFQSRRVYMKYMVLNKTFGMLLQDFI--YFSANVN 472
           +  R  +S C VD + NF   RL  +    R    ++    TF   L+ F   YF  N++
Sbjct: 514 IFSRIFISRCFVDVIFNFAKGRLDATHLRSRALTFFLPDVTTFVEHLEKFCDAYFHRNMS 573

Query: 471 FDLLCECSACVNELHLVLV 415
            D  C+     N LHL+ V
Sbjct: 574 TDYTCKDLVLYNLLHLMNV 592


>AC024814-2|AAK68521.2|  259|Caenorhabditis elegans Hypothetical
           protein Y54F10AR.1 protein.
          Length = 259

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = +1

Query: 121 FSTYYYGHDFDHLSD*DPILFLSYCSKRGKNIHDRYWSWSPVCSTHSMSNFKHN*ENIRI 300
           F+   Y H   HL    P +      K    IH+  W+  P C T  ++N  +  EN  +
Sbjct: 46  FTKGQYTHKIYHLQSKVPAILRKIAPKGSLAIHEEAWNAYPYCKT-VVTNPDYMKENFYV 104

Query: 301 NLK 309
            ++
Sbjct: 105 KIE 107


>U41106-3|AAA82411.1|  261|Caenorhabditis elegans Hypothetical
           protein W06A11.3 protein.
          Length = 261

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 697 NVKCVIFIYFYFVSHKFCHC 638
           ++ C +F  FYFV H+F  C
Sbjct: 242 HLSCFVFRLFYFVFHRFFSC 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,975,840
Number of Sequences: 27780
Number of extensions: 258904
Number of successful extensions: 567
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)