Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0331
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59510.1 68416.m06641 leucine-rich repeat family protein cont...    29   3.9  
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ...    27   9.1  
At1g52615.1 68414.m05940 hypothetical protein                          27   9.1  

>At3g59510.1 68416.m06641 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; contains some similarity to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 419

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -1

Query: 494 SIFLLMLTLICCVSVLHV*MNFI*YWSEPIELWLEDPTITGISGYYSLWDISQHP 330
           S+F L+L+LI   SVL   +       E I +   DP+    S Y S WD S+ P
Sbjct: 21  SLFFLLLSLIVPSSVLSATLRSDIQALESI-IRSVDPSSISPSSYLSTWDFSEDP 74


>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 609

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +2

Query: 437 FTHAEHSHSKSKLTLAEK*MKSCNSIPNVLFKTIYFM*TRRD*KDNFNLIYLK 595
           F H  H H    L L    +K+C     ++  +++ M T++    N  +I++K
Sbjct: 484 FIHGSHDHHLLYLKLENGNVKTCQGCGTMIIHSLFVMVTKKQ-AANIGVIFVK 535


>At1g52615.1 68414.m05940 hypothetical protein
          Length = 318

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 170 ILFYSYPTVQNGEKIFTTGIGHGHLCAALTVCPTSNIIK 286
           ++F+S+  VQN  K   + IG+     A +VCPTS   K
Sbjct: 26  VIFHSFAFVQNTAKKKYSLIGNKERKDASSVCPTSQDAK 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,798,616
Number of Sequences: 28952
Number of extensions: 227256
Number of successful extensions: 424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)